PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027163492.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27076.8 Da    PI: 9.6777
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027163492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-271058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ri+n++ rqvtfskRrng+lKKA+EL vLCdaev v+ifsst klyey+
  XP_027163492.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAVLCDAEVGVVIFSSTSKLYEYA 58
                    8***********************************************8 PP

2K-box81.32.2e-27841701298
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++ + +q+e++ L+++++nLq+ +R+l+Ge+L  Ls+k+Lq Le+qLe sl+ iR kK+++l+++i+el +k   +++en +L kk+
  XP_027163492.1  84 SEVKFWQREATILRQQLHNLQEIHRQLMGEELYGLSVKDLQGLENQLEMSLRGIRMKKEQILTDEIRELHRKGCLIHQENAELYKKV 170
                     67899*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAVLCD AEVGVVIFSS TSKLYEYANT  60
SMKSVLERYS KAKEERHQLL SPLSEVKFWQ REATILRQQL HNLQEIHRQL MGEELYGLSV  120
KDLQGLENQL EMSLRGIRMK KEQILTDEIR ELHRKGCLIH QENAELYKKV NFHQQEIISL  180
HKKAYSTSNS NATHGNTITP YGFAITEEQH APIHLQLSQP ESQNFVTSEG TSESR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-99MIKC_MADS family protein