PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027163455.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 725aa    MW: 81695.4 Da    PI: 6.7423
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027163455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.43e-1213527221374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+a++++d + a+++L+++++++sp+gd mqRla+yf+ +L+ar+a+s++++ykal + +ts    +++l+a++l+  ++P+ k+s+
  XP_027163455.1 352 LRTLLTLCAQAIAADDRRTANEFLKQIRQHCSPTGDGMQRLAKYFADGLEARMAGSGTQIYKALITMPTS---AADVLKAYQLYLAACPFRKISN 443
                     5789************************************************************999999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++I  a+e+ +++HiiDf+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef + +a+++e+
  XP_027163455.1 444 FFSNKTIWHAAEKGSTLHIIDFGILYGFQWPCLIQRLSSRPGGPPKLRITGIDLPHPGfrPAERVEETGRRLANYAETFKVPFEFIA-IAQKWET 537
                     ********************************************************9999***************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E+laVn+ +++ +llde+v ++s+r+ vL+l+++++P+v+v+   +  +n++ F++rf eal +ys++fd+lea++pre +er+
  XP_027163455.1 538 VRIEDLKIREDEVLAVNCLYRMRNLLDETVVVNSPRNIVLNLIRKMKPDVFVLGIVNGAYNAPFFVTRFREALFHYSSFFDMLEANIPREIHERM 632
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+ ++gre++nv+ace aer+er et+++W+ r  +aGF+++pl+e+++  ak   + +++d + ++e+s++l++gWk+r L+++S+Wr
  XP_027163455.1 633 LLEKTIFGREAMNVIACEAAERIERPETYKQWQVRNLRAGFRQLPLNEDIMRMAKERAKSYDKD-FVIDEDSQWLLQGWKGRILYALSSWR 722
                     **************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    
MVMDGNSRVG YGTTSGIELN DEGVSVVPNP NLIGSLRLDG NVVERNYASR LSVQSHLYPN  60
EFVPLSSGDS NEDYDFSDAV LKYINDMLME EEMEDKGCMF QESAALQAAE KSFYDVLGEK  120
YPPPPDHQVP SSNLRVSSRE ESYLGGYGGL IWCPSWNNGT SGSDSTYVQH FSPYSSSNSS  180
GTVADGHIDS PDSILRISDI FSDSQSAMQF KKGVEEASKF LPNGNALLVD SQENGLLDKD  240
QKKWPMTVKV ERSENGYSPD ESRGKKNPLH EDLQQQGGRS NKQSAVFTES TVRSDLFDKV  300
LLCSEGRNES DLRKALQDIA VKNVPQNNKL KGSSGGKSRS KKQGAKRNMV DLRTLLTLCA  360
QAIAADDRRT ANEFLKQIRQ HCSPTGDGMQ RLAKYFADGL EARMAGSGTQ IYKALITMPT  420
SAADVLKAYQ LYLAACPFRK ISNFFSNKTI WHAAEKGSTL HIIDFGILYG FQWPCLIQRL  480
SSRPGGPPKL RITGIDLPHP GFRPAERVEE TGRRLANYAE TFKVPFEFIA IAQKWETVRI  540
EDLKIREDEV LAVNCLYRMR NLLDETVVVN SPRNIVLNLI RKMKPDVFVL GIVNGAYNAP  600
FFVTRFREAL FHYSSFFDML EANIPREIHE RMLLEKTIFG REAMNVIACE AAERIERPET  660
YKQWQVRNLR AGFRQLPLNE DIMRMAKERA KSYDKDFVID EDSQWLLQGW KGRILYALSS  720
WRPAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein