PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027163369.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 339aa MW: 37547.3 Da PI: 9.7189

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027163369.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.9	7.2e-20	38	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkr....tsessstcpyfdqle 86 +W+++e+ aLi+a+r+++ +lrrg+l++++W+ev++ + g ++++qC++k+e+l+kry+++ +++ + + s +++f++++ XP_027163369.1 38 CWSHDETVALIDAYRDKWYSLRRGNLRANHWQEVADDVasrCPIGNPKTAVQCRHKMEKLRKRYRAEIQRAAPYggskSHRYCSAWVHFKRMD 130 8***********************************66556799******************999876432111344456788888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MATSSPSAQD RSTPPLLEGP PAVTIATAAA SRRLPPPCWS HDETVALIDA YRDKWYSLRR 60 GNLRANHWQE VADDVASRCP IGNPKTAVQC RHKMEKLRKR YRAEIQRAAP YGGSKSHRYC 120 SAWVHFKRMD AMEKGPNSSA AAEADEDEED EEDSHVKPIG DIYNTNSLNH TGSYINNNSS 180 NRSSFHGGMV NGGTGFRIRI PGRGNVGPAA AAKVYSRFDE MGGQNPNPNA GVNYGSTKAL 240 RDGFGGRGNI GKRVVGGDVK TGDPLAEMVS AIRVLGDGFV RMERMKMDMT REVEEMRMEM 300 EMKRTEMILE SQQRIVEAFA KAISEKKLKK VKRMQNQEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-60	Trihelix family protein