PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027163122.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 500aa    MW: 55252.9 Da    PI: 7.9863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027163122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-056587123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C k F r  nL+ H r H
  XP_027163122.1 65 FICEICQKGFQRDQNLQLHRRGH 87
                    89*******************88 PP

2zf-C2H212.90.00032141163123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H rt+
  XP_027163122.1 141 WKCDKCSKKYAVQSDWKAHSRTC 163
                     58*******************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    
MSNISGDDEP FKHYSASTPT NSDGSSIQQQ QAPKDKKKRN PPGNPDPDAE VIALSPKTLM  60
ATKRFICEIC QKGFQRDQNL QLHRRGHNLP WKLRQRTSTE TRKRVYVCPE TCCVHHHPSR  120
ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS RTCGTREYKC ECGTIFSRRD  180
SFVTHRAFCD ALAEENSKIS QVLAANKGGT NIESPEDLET MSTRTFENKL GTSMAAPDLS  240
HLDGTISMMK TPPNELMQMS MEPLNIAGLT MFPSTLLGSP RNLSFPSSRP QLSTNSPTVL  300
KGYNDSNSKC HQEASIAQFS ATALMQKAAQ IGSIMRSNIS SPMVQKGFTP NMAPLSYNGT  360
LKYLSDTNIF HQRGTEKVSA SDQLHDPLSN GDESSRMQNL GTNNGLLFNE NLDFLHNNEG  420
ACDADDGDTT INGRNQAGIY ARSLKNSNFM TLDLLGIGGF GHTVFHGMQQ QEMDVEAATT  480
VLEDASCIGY VSATDHSTHN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.17e-99C2H2 family protein