PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027163122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 500aa MW: 55252.9 Da PI: 7.9863 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.4e-05 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C k F r nL+ H r H XP_027163122.1 65 FICEICQKGFQRDQNLQLHRRGH 87 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00032 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H rt+ XP_027163122.1 141 WKCDKCSKKYAVQSDWKAHSRTC 163 58*******************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence |
MSNISGDDEP FKHYSASTPT NSDGSSIQQQ QAPKDKKKRN PPGNPDPDAE VIALSPKTLM 60 ATKRFICEIC QKGFQRDQNL QLHRRGHNLP WKLRQRTSTE TRKRVYVCPE TCCVHHHPSR 120 ALGDLTGIKK HYSRKHGEKK WKCDKCSKKY AVQSDWKAHS RTCGTREYKC ECGTIFSRRD 180 SFVTHRAFCD ALAEENSKIS QVLAANKGGT NIESPEDLET MSTRTFENKL GTSMAAPDLS 240 HLDGTISMMK TPPNELMQMS MEPLNIAGLT MFPSTLLGSP RNLSFPSSRP QLSTNSPTVL 300 KGYNDSNSKC HQEASIAQFS ATALMQKAAQ IGSIMRSNIS SPMVQKGFTP NMAPLSYNGT 360 LKYLSDTNIF HQRGTEKVSA SDQLHDPLSN GDESSRMQNL GTNNGLLFNE NLDFLHNNEG 420 ACDADDGDTT INGRNQAGIY ARSLKNSNFM TLDLLGIGGF GHTVFHGMQQ QEMDVEAATT 480 VLEDASCIGY VSATDHSTHN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 7e-99 | C2H2 family protein |