PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162950.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 685aa MW: 75391.1 Da PI: 6.6581

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C + F ++ n++rHir+H XP_027162950.1 77 KCEKCAQEFCSPVNYRRHIRVH 98 7*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MPVAKLSTGG TLDSMKSGDG NDSLDTVSRQ TVGKEPHISL SRTGDIPVQW IQLLQALDQQ 60 ELPGWPLLTP LKVQMEKCEK CAQEFCSPVN YRRHIRVHRR SLNFDKESHK IRDMLAAFWD 120 KLSLEDAKEV VSLRDVTLKE VTGTSVIKSL VASLHKPGVW TLPQVYVKAG STLLDVIHAK 180 SSRLPISSQE LFSILDDASE RTFLRAGTAE SVLKYIFGGK PGRIAFELKN LVACTSFLFE 240 LKLVKAWVAD KDAEALRCQK LLVEEEEAAQ KRQAELLERK KQKKLRQKEQ KAREHSNGDG 300 VALIDATSSE GSFLAEMCSS SPPDSSPDAP CTVDDGTTFL KPVQLSSTEQ NNDIEAQSDL 360 SSGHLDSGLV QNVEPTMVSV NGRRWRQVSK SHWAGRSDFH GNQNHQVSKL EPVQKLVPAK 420 DRGTVVSSSK VWTKKLKVDN DEEILRPTLE EAVNQSDENK CELIIGSISI PVTNCILRKN 480 KISLGEAHYS CSTEEGKHKS NVLEEPANSD SRQFGLNEAA TELRMPKSLH GSRGPSPVQR 540 ANHDAQDGVM VDKLEDRTAS DGSCLQSSSS DDDHSQSREG LTCVYEGMAM PQGLQLSTAA 600 AKAFLAQRWK EAISAEHVMT LVLSEESDLP GLPENQIDIS ALDFENGQVD LGRISSTGGI 660 TKAKNRTNPE KGVKIKYIPK QKVAS

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MPVAKLSTGG TLDSMKSGDG NDSLDTVSRQ TVGKEPHISL SRTGDIPVQW IQLLQALDQQ  60
ELPGWPLLTP LKVQMEKCEK CAQEFCSPVN YRRHIRVHRR SLNFDKESHK IRDMLAAFWD  120
KLSLEDAKEV VSLRDVTLKE VTGTSVIKSL VASLHKPGVW TLPQVYVKAG STLLDVIHAK  180
SSRLPISSQE LFSILDDASE RTFLRAGTAE SVLKYIFGGK PGRIAFELKN LVACTSFLFE  240
LKLVKAWVAD KDAEALRCQK LLVEEEEAAQ KRQAELLERK KQKKLRQKEQ KAREHSNGDG  300
VALIDATSSE GSFLAEMCSS SPPDSSPDAP CTVDDGTTFL KPVQLSSTEQ NNDIEAQSDL  360
SSGHLDSGLV QNVEPTMVSV NGRRWRQVSK SHWAGRSDFH GNQNHQVSKL EPVQKLVPAK  420
DRGTVVSSSK VWTKKLKVDN DEEILRPTLE EAVNQSDENK CELIIGSISI PVTNCILRKN  480
KISLGEAHYS CSTEEGKHKS NVLEEPANSD SRQFGLNEAA TELRMPKSLH GSRGPSPVQR  540
ANHDAQDGVM VDKLEDRTAS DGSCLQSSSS DDDHSQSREG LTCVYEGMAM PQGLQLSTAA  600
AKAFLAQRWK EAISAEHVMT LVLSEESDLP GLPENQIDIS ALDFENGQVD LGRISSTGGI  660
TKAKNRTNPE KGVKIKYIPK QKVAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	285	ERKKQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-115	C2H2 family protein