PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027162854.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 607aa    MW: 68513.2 Da    PI: 7.0288
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027162854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.21.4e-15126187268
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                     W+++evlaL+++r++me+++ +       We+vs+k+ e g++rs+++Ckek+e+ ++ +  ++ ++
  XP_027162854.1 126 WSNDEVLALLRIRSSMENWFPEI-----TWEHVSRKLTELGYHRSAEKCKEKFEEESRHFNSMNYNK 187
                     ********************998.....9****************************9998877554 PP
2trihelix90.51.7e-28493582186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++ev+aLi+++ ++ +++ ++      +k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf ql 
  XP_027162854.1 493 RWPRDEVQALINLKCRLTNNSTSDDsikegAKGPLWERISQGMLELGYKRSSKRCKEKWENINKYFRKTKDNNKKR-SLDSRTCPYFLQLS 582
                     8*************99888888653344559********************************************8.9999******9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    
MFDGVPADQF HQFLAASSRT SLPIPLSFPL HHHGVSIPSS AASVSLASPP LPPTSATPPA  60
PAFLGCFDPY SSPLTLDVQV QPHHHHQQSG LHHRLHHQSP PPTSKNGEEK EEREGSISAA  120
IPLDPWSNDE VLALLRIRSS MENWFPEITW EHVSRKLTEL GYHRSAEKCK EKFEEESRHF  180
NSMNYNKNYR FFSDLDELYN DENPQVSTEK SQDLVKEKDK PEGDNKMDAS TLQEEEDTGN  240
TVAVANPSDQ ENAELVKEST KSRKRKRNHK FEMFKGFCEA VVKKIVEQQE VLHNKLIEDM  300
VRRDRESIAR DEAWKCQEMD RINKEIEMRA QEQAIACDRQ GKIIDLLKKF TSGSEADQSL  360
VRRIEDLLKV TNSSNSVTSS SEILPPSSLN SDQTKLEGVT STSMAISHHN PTLVLSRNNP  420
TSSGETTPSP HNHCSTPQAT SSATLPTTSQ NPNTNSYKYH EDPSQPNPSL AQKSSQKMVS  480
APNERGERIA GKRWPRDEVQ ALINLKCRLT NNSTSDDSIK EGAKGPLWER ISQGMLELGY  540
KRSSKRCKEK WENINKYFRK TKDNNKKRSL DSRTCPYFLQ LSTLYGQGTL VAPSNLPENR  600
QTSPENH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-86Trihelix family protein