PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027162824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 26440.2 Da PI: 4.153 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.2e-16 | 72 | 121 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++aa ++l+g XP_027162824.1 72 PHFRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDAATLALKG 121 689***6..668*********843...5*********************999987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MLESDQPNNS LRPDDPDPDD PPQPKEQPKP TGIIATASWS NTCECPPPPS QPSPSATIPS 60 PTGSSGPSRR HPHFRGVRSR SGKWVSEIRE PRKTTRIWLG TYPTPEMAAA AYDAATLALK 120 GPDAILNFPE LAPTYPIPAS LSAADVRAAA ASAAAAREPL QEPPVLDQAP ATSPRDPVEI 180 NEDVNASTSG DNQMGQDQFV DEEELFDMPN LLVDMAEGML VSPPRMKPAV SGESPENSDA 240 DNLWSYP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 6e-46 | ERF family protein |