PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027162652.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 325aa MW: 36703.4 Da PI: 8.2884 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.2 | 3.4e-06 | 164 | 183 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ XP_027162652.1 164 FSCPVCFKTFNRYNNLQMHM 183 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.8 | 4e-05 | 248 | 270 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ XP_027162652.1 248 FMCRKCGKPFAVKGDWRTHEKNC 270 89*****************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence |
MAEPCYYNFF PGWCNFIPHH PHFSSSNSNA VNSISSSEIE FSLSPPSPPR KEALPLLNNL 60 SFRPDEQQDF SGYALEDDRC TSTKTESSLS GTPPLHDFVT VALNIGLPSP SSDLSSSRLP 120 SCNWDKREKE GGNVLSELPL NDKLNKGQYW IPSPSQILIG PTQFSCPVCF KTFNRYNNLQ 180 MHMWGHGSQY RKGPESLRGT QPTAMLKLPC YCCAPGCKHN IDHPRTRPLK DFRTLQTHYK 240 RKHGIKPFMC RKCGKPFAVK GDWRTHEKNC GKIWYCICGS DFKHKRSLKD HIRAFGRGHG 300 ALGIHVSEEE DDSASDIDQE RESPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-113 | C2H2 family protein |