PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162593.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 998aa MW: 110614 Da PI: 6.9909

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.2	5.1e-09	221	282	20	82
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 + rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ +++ +yf XP_027162593.1 221 APARGKTRADKDREVAEFLNRHGVSRDAKTAGTKWDNMLGEFRKVYEWERGGERDQV-GKSYF 282 556788999999**************************************9955444.44555 PP

Sequence ? help Back to Top
Protein Sequence Length: 998 aa Download sequence
MSDSKGDSKQ HLSTPAEDPD QEPTENISQQ QQHQQQQQHG IGLTGAPFVS APSYIPSVAT 60 AGSFEQQQQQ QLHFEAVNPK RPRYTAGQWK LSPSASSQQP PQKRQTQTNI LVATDSSPSP 120 TPTQVATNPQ TVAVAASSSD TASSPSHSPR PSHSTASGHE AANPEGSLFQ HQQFRKGKYV 180 SPVWKPNEML WLARAWRVQY QGGGGSELGE GGAAADVAAT APARGKTRAD KDREVAEFLN 240 RHGVSRDAKT AGTKWDNMLG EFRKVYEWER GGERDQVGKS YFRLSPYERK LHRLPASFDE 300 EVFEELSQFM SSRMRTHSRG VSPGIVSGGI GGDDGRSVLA TTTKSSLAPP PPYREEDLSL 360 PAARSKQLVA TSSGAEAFPL GGRGGTTLGF ETSLDVLGGG PSTSTYSKEF RRIGKIRMIW 420 EESVSLWAEE GEHHRGRVKI QGSSFLNADE IAFLDDSMVA CTMEAFEDGP LKGFSVDRFL 480 PGQHVKVFGR RKSFFVPVPI PSGPSERVPV HSAEPSNISR PIPAWEFQDP SDYYLGCLRV 540 PPPTLPSLFE LSWHLQEPPP EEFRFPLRKD VYKDLPQGKD LFFSISSELL DCRAIAYDIL 600 SPIMRQNPSL SGASASARDS FIGLWDDCVN RIVSKFCAVE MVFVRKSSSP LAETMQDEWP 660 NMTAFVRNFC LWRGEETDQL REGQIDPSSS IVEKLLWTYA DLPYVLGYYA VGYIVTFCAM 720 SRSQDRIVRT DLYTVDLSTP MERLKALVPC WRIAGLLPLL ADRCSQSSMS INGGDVSYRL 780 LPYSDFERID LGSGSILEMT PNSVTRLFSS KRRWAAVKEI YDFLDHRIPH VEFIIRSSEK 840 DLGIVFKPRG CKLKPTSCDQ LIEALKQVTK ALVALHDLSF MHRDLGWEKV MKRSDRENEW 900 FITGFDEAVS APQIYPHGGA ASGRHAPEMG RGLHGVKVDV WGVGQLVKTC GLVAVPKLLR 960 ELQNRCLDHN PEQRPTAADC YHHLLQLQSS MSAAAGGY

Sequence ? help Back to Top

Protein Sequence Length: 998 aa Download sequence

MSDSKGDSKQ HLSTPAEDPD QEPTENISQQ QQHQQQQQHG IGLTGAPFVS APSYIPSVAT  60
AGSFEQQQQQ QLHFEAVNPK RPRYTAGQWK LSPSASSQQP PQKRQTQTNI LVATDSSPSP  120
TPTQVATNPQ TVAVAASSSD TASSPSHSPR PSHSTASGHE AANPEGSLFQ HQQFRKGKYV  180
SPVWKPNEML WLARAWRVQY QGGGGSELGE GGAAADVAAT APARGKTRAD KDREVAEFLN  240
RHGVSRDAKT AGTKWDNMLG EFRKVYEWER GGERDQVGKS YFRLSPYERK LHRLPASFDE  300
EVFEELSQFM SSRMRTHSRG VSPGIVSGGI GGDDGRSVLA TTTKSSLAPP PPYREEDLSL  360
PAARSKQLVA TSSGAEAFPL GGRGGTTLGF ETSLDVLGGG PSTSTYSKEF RRIGKIRMIW  420
EESVSLWAEE GEHHRGRVKI QGSSFLNADE IAFLDDSMVA CTMEAFEDGP LKGFSVDRFL  480
PGQHVKVFGR RKSFFVPVPI PSGPSERVPV HSAEPSNISR PIPAWEFQDP SDYYLGCLRV  540
PPPTLPSLFE LSWHLQEPPP EEFRFPLRKD VYKDLPQGKD LFFSISSELL DCRAIAYDIL  600
SPIMRQNPSL SGASASARDS FIGLWDDCVN RIVSKFCAVE MVFVRKSSSP LAETMQDEWP  660
NMTAFVRNFC LWRGEETDQL REGQIDPSSS IVEKLLWTYA DLPYVLGYYA VGYIVTFCAM  720
SRSQDRIVRT DLYTVDLSTP MERLKALVPC WRIAGLLPLL ADRCSQSSMS INGGDVSYRL  780
LPYSDFERID LGSGSILEMT PNSVTRLFSS KRRWAAVKEI YDFLDHRIPH VEFIIRSSEK  840
DLGIVFKPRG CKLKPTSCDQ LIEALKQVTK ALVALHDLSF MHRDLGWEKV MKRSDRENEW  900
FITGFDEAVS APQIYPHGGA ASGRHAPEMG RGLHGVKVDV WGVGQLVKTC GLVAVPKLLR  960
ELQNRCLDHN PEQRPTAADC YHHLLQLQSS MSAAAGGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	6e-07	Trihelix family protein