PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027162526.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 312aa MW: 32448.8 Da PI: 6.7717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027162526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H XP_027162526.1 136 YKCSVCNKAFSSYQALGGHKASH 158 9***********99999998887 PP
2	zf-C2H2	15.9	3.7e-05	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF++ L H r+H XP_027162526.1 194 HVCSICNKSFPTGQALGGHKRRH 216 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MALEALNTRA APPPPSLVYD EEFRNLSFEK YVKKKRSKRP GSASCSPPRP ENSSSEDDNP 60 SSLEERCKEE YLALCLIMLA RGGNDKNVAS SSSAAKDKNV ASSSSAANDK NVASSSTGFK 120 TENQETEPSL PEAQSYKCSV CNKAFSSYQA LGGHKASHRK LSAAVSDDEK PSTSAAAPGN 180 APYVSALNPS GRAHVCSICN KSFPTGQALG GHKRRHYEGT IGGHTVGHGG VSATATASGS 240 GVTCSDGGGA SPSHAALGID LNVPAPELEF ELGFGVDCGV ESQRLAEHEE VDSPMPTKKP 300 RLSFSVDLGC AA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	8e-40	C2H2 family protein