PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027162442.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 315aa    MW: 35194.4 Da    PI: 8.2435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027162442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.61.2e-32652081128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                     lp+G++F+P+d+e++ e+L+++v  ++      ++++  +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+          
  XP_027162442.1  65 LPAGVKFDPSDQEIL-EHLEARVLLDSrkihplIDEFIpTIEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKvhtdteadgG 157
                     799***********9.899999887774565443332333665557**********.666777788******************75666554443 PP

             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v+  +g+l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_027162442.1 158 GETRWHKTGKTRPVFI-SGALKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 208
                     3778************.999***********66589**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MTWCSNESNQ ENLPLQIVPA QISHEKSTTV LNSKLNEVKT IACPSCGHPL EVQDQTGLLQ  60
DLPGLPAGVK FDPSDQEILE HLEARVLLDS RKIHPLIDEF IPTIEGENGI CYTHPEKLPG  120
VNKDGQIRHF FHRPSKAYTT GTRKRRKVHT DTEADGGGET RWHKTGKTRP VFISGALKGY  180
KKILVLYTNY GRQRKPEKTN WVMHQYHLGT NEEEKDGELV VSKVFYQTQP RQCGGSSSIS  240
ELDKRSTSSV SHSHLIKSTS NNFIDYYPHP YNNISYNLGS QSGDSHSSSQ LIPNLVVHGD  300
GSSFIHLPSS VSKGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-122NAC family protein