PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161893.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 310aa MW: 35120.4 Da PI: 5.0031

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	6e-16	27	118	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +L++a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f +l+a XP_027161893.1 27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQEVADAVnarhgHTKKTRRTDVQCKNRIDTLKKKYKIEKAKISESNGTLTSSWPFFARLDA 118 7***********************************99888888999*****************9999988888899****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MGEFSDLSPA PLLQTPPTRS LPFREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQEV 60 ADAVNARHGH TKKTRRTDVQ CKNRIDTLKK KYKIEKAKIS ESNGTLTSSW PFFARLDALI 120 GNNLKNQQQK TSPMVNSLSS HSPLSLPSPP MGIPLINMKL PQLLPPATSA AVEPVVLPQK 180 RQFSAVDDSY FRKNYSAVAA AAAAAAEEVE DDEEEDGGSE EDEDEEVERE EGTVAGEEGV 240 RRLAKAIERF GEIYERVENM KQRQMVELEK QRMQFAKDLE VQRMQLFMDT QVQLEKIKQS 300 KRSGSDDLYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-52	Trihelix family protein