PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161890.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 365aa MW: 39749.8 Da PI: 6.7816

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.3e-30	183	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp + ++tY+geHnh+ XP_027161890.1 183 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPGIYIVTYTGEHNHP 241 79**********************9988**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MADDWDLQAV VRGCTATTTT TSGSSTTTAT CTGNSFRPLG GFEPHQDGNF LCFQDLFFEP 60 RSQSSISAVV DQDLHDLYKP FFPKSSPPLS PQSIPISPLS VLGGLQDLSQ QPPQQQHQQP 120 KKQLQQQQQQ IYQPKHSSTL LPIGASSRSS GANGSSSASN HRSKRRKNQL KRVCQVPAEA 180 SSSDMWSWRK YGQKPIKGSP YPRGYYRCST SKGCLARKQV ERNRSDPGIY IVTYTGEHNH 240 PMPTHRNSLA GSTRNKPATP QSTSSGDPSK PSSSPPVSPS ASLSPAPEKL ELETSKEEIL 300 EDEEDDVSGF EMAMDDDFFE GLEEFAGKSA VTDNFSSDHF PQSMQQLPWL ANNANSTTGT 360 AAGGC

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MADDWDLQAV VRGCTATTTT TSGSSTTTAT CTGNSFRPLG GFEPHQDGNF LCFQDLFFEP  60
RSQSSISAVV DQDLHDLYKP FFPKSSPPLS PQSIPISPLS VLGGLQDLSQ QPPQQQHQQP  120
KKQLQQQQQQ IYQPKHSSTL LPIGASSRSS GANGSSSASN HRSKRRKNQL KRVCQVPAEA  180
SSSDMWSWRK YGQKPIKGSP YPRGYYRCST SKGCLARKQV ERNRSDPGIY IVTYTGEHNH  240
PMPTHRNSLA GSTRNKPATP QSTSSGDPSK PSSSPPVSPS ASLSPAPEKL ELETSKEEIL  300
EDEEDDVSGF EMAMDDDFFE GLEEFAGKSA VTDNFSSDHF PQSMQQLPWL ANNANSTTGT  360
AAGGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	6e-59	WRKY family protein