PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027161233.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 602aa MW: 63967.4 Da PI: 6.5454

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027161233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.1	1.5e-23	224	267	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e+ XP_027161233.1 224 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKPVEQ 267 69**************************************9985 PP
2	QLQ	52.6	1.4e-18	161	193	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTa Q+ +L++Q+++yKy++a++PvP++Ll++ XP_027161233.1 161 PFTAVQWKELERQAMIYKYMIASVPVPSDLLLP 193 8******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS 60 QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV 120 TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPALGF PFTAVQWKEL ERQAMIYKYM 180 IASVPVPSDL LLPADPTAAP SVLLGGSHGG GGSIYNLRYG NRDLEPGRCK RTDGKKWRCS 240 RDVAPHQKYC ERHMHRGRPR SRKPVEQLQS SSVSPDDNPN NNISKKSRLH HTSLHPNPTV 300 AQPNNHSSPQ FQGTGTIQQL KDPQLLDASI AFNSIFASSC NYKESNRVFG WAVDGEVMAA 360 NRVEQESLHL MDTRRREGLA PIRGYIYGTN ASTLQQGYGE EGPLNLFSYA TEIAYPGGIH 420 SRNDEYYHAF LNSDLIASKQ PQIDQHCPPR GFIDAWSNGD LKTIDESSSV PSSKGYGLSP 480 SSLTLSMAMA AGNALDEGMG LDEDSRPRMP TPKDSPVSWL PLIPGGPLAE VLQPNSVACG 540 SNPASPYASN GDSVSPPATT VSSPTGIFQR ALFSHSDGSV CNSPTLAASA APPEVVAFQW 600 LN

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MEGSSSSSSS AGITTESHRT QSFPSNNSVM DHHHRPLLSS ANGADDDDED DGGGRGSGPS  60
QNDSGPNEVE RSPAPTPTPK PPNHSCHHSS STGPSRSSSS RATTTSTSTG IVFPDHVVVV  120
TNNGSATAGL AAAAAATTLQ PFDSPCSITN TASKSPALGF PFTAVQWKEL ERQAMIYKYM  180
IASVPVPSDL LLPADPTAAP SVLLGGSHGG GGSIYNLRYG NRDLEPGRCK RTDGKKWRCS  240
RDVAPHQKYC ERHMHRGRPR SRKPVEQLQS SSVSPDDNPN NNISKKSRLH HTSLHPNPTV  300
AQPNNHSSPQ FQGTGTIQQL KDPQLLDASI AFNSIFASSC NYKESNRVFG WAVDGEVMAA  360
NRVEQESLHL MDTRRREGLA PIRGYIYGTN ASTLQQGYGE EGPLNLFSYA TEIAYPGGIH  420
SRNDEYYHAF LNSDLIASKQ PQIDQHCPPR GFIDAWSNGD LKTIDESSSV PSSKGYGLSP  480
SSLTLSMAMA AGNALDEGMG LDEDSRPRMP TPKDSPVSWL PLIPGGPLAE VLQPNSVACG  540
SNPASPYASN GDSVSPPATT VSSPTGIFQR ALFSHSDGSV CNSPTLAASA APPEVVAFQW  600
LN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	5e-35	GRF family protein