PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027160496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 478aa MW: 52907.3 Da PI: 4.6208 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 121.6 | 3.8e-38 | 161 | 259 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 lfqrlw++eDei lLqG++++++++g+ s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgke +f+++hdq +fe+s+ XP_027160496.1 161 LFQRLWTDEDEIELLQGFLEYTTSRGVinsSHHHDTTAFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKMSSGKEYVFKSPHDQATFEISR 255 79************************99845556************************************************************* PP DUF573 94 kiWg 97 kiWg XP_027160496.1 256 KIWG 259 ***8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence |
MAASQEDRNV YNPEDLDDDE EDEEGIGGLI HNPGNNTNDI NPPENDVVVD DEDDDVDVDV 60 DVDEDDDVDD STSSSNLAAA DHHHHDPSSL LNHHHHHHIH LPPPPSLSPG DVTVALPTDQ 120 SLRPDAERQR IDEVTVASVS AVARAVVEEK KPVPNDESRR LFQRLWTDED EIELLQGFLE 180 YTTSRGVINS SHHHDTTAFY DQIKSKLQLD FNKNQLVEKL RRLKKKYRNV MNKMSSGKEY 240 VFKSPHDQAT FEISRKIWGG SGVGASVRSG VVMEEGGFDD DDGNPNFSVN FIDQSPNPNF 300 NLNPNGIDHL EKKTPRSRKR SRGVGGVKIE EKPFGYTSVP TLQNSNQQQS VQNVQNMQNV 360 GVVTPTATQI GPVTAAAGSA GSGQATNLIE ETVRSCLSPI FKELLNSVMS LNGPMMGGSR 420 GFGFALSPMP LGLNGDLVAD EKWRKQQILE LEVYSKRLEL VQDQIKAQLE ELRSMGSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28040.1 | 8e-77 | GeBP family protein |