PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027160327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28083.2 Da PI: 7.128 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.6e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ey XP_027160327.1 9 KRIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFEYG 58 79**********************************************95 PP | |||||||
2 | K-box | 43.4 | 1.4e-15 | 87 | 168 | 14 | 95 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 +++ ++ +a L +ei++ e+Rhl+Ge+L Ls+++L +Le+ +e +l++i ++K+ ll+e+ +l++k ++e+++ L XP_027160327.1 87 TQRENHTHAMLAEEIKEKTAELRHLKGEELVGLSMEDLVKLEKLVEAGLSRIAKTKEALLKEENAKLRQKVAGTSEDETPLL 168 577788999999*****9****************************************************998888877665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MVRQRIQIKR IDNLTARQVT FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLFEYGSS 60 SMMQVIERHR LCSEDIGRQD KHPPHLTQRE NHTHAMLAEE IKEKTAELRH LKGEELVGLS 120 MEDLVKLEKL VEAGLSRIAK TKEALLKEEN AKLRQKVAGT SEDETPLLEQ GISSESVTRL 180 SDQVGSCPQD LNNSDTFLQL GEDEIAVAED RIYNLSIAGS MIPRNCSLCC IIFLKKNNMH 240 VCQACSSLST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-58 | MIKC_MADS family protein |