PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027159621.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 22951.4 Da    PI: 9.2876
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027159621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.2e-301058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ 
  XP_027159621.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFG 58
                    8**********************************************95 PP

2K-box65.32.1e-2279154681
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                     ++  +e+++++l+qe a + k+ie L+ ++R+llGe+L s++++eLqqLe+qLe+s++ iR++K+++l ++ ++l 
  XP_027159621.1  79 NNPSAEQNMQQLKQETASMVKKIELLEASKRKLLGEGLVSCTVEELQQLERQLERSVNCIRARKEKVLEAENDKLL 154
                     344899***************************************************************9988775 PP

Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFGSS  60
SMKEIIERYQ KHAKDVRANN PSAEQNMQQL KQETASMVKK IELLEASKRK LLGEGLVSCT  120
VEELQQLERQ LERSVNCIRA RKEKVLEAEN DKLLEKCGAE PPQTSKENTE IVPCTESSEV  180
SDVETGLFIG PPERRNKLVL KN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-72MIKC_MADS family protein