PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027159399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HB-other | ||||||||
Protein Properties | Length: 1663aa MW: 186127 Da PI: 5.2491 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55 | 1.4e-17 | 26 | 81 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+ +e++ yps+++r+ L +klgLt+rq ++WF+ rR k+kk XP_027159399.1 26 PKRQMKTPFQLEVLEKTYENETYPSEATRAVLMEKLGLTDRQLQMWFCHRRLKDKK 81 69****************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1663 aa Download sequence |
MDAGSDGEGN SNRNLNQSPS EGQKKPKRQM KTPFQLEVLE KTYENETYPS EATRAVLMEK 60 LGLTDRQLQM WFCHRRLKDK KEAAGMAAMK PRSATGSVGK RGLMDSPRDE MMMAEPGSEN 120 LSSSGSGSSE FDNGDEMPMV PIRYFESPRT VLERRVIACV EAQLGEPLRE DGPILGVEFD 180 ELPPGAFGAP IVTAEHRERY RHSYDNKPYG SYDTKQIKAV PSSHQESAEP KIRSDAYGQV 240 APPYLYDSPV AGPAGKTLPL MQGNGHLSRD YGLEGQASSA SILSQQGRQG HLPSPPTHDA 300 FISNNEDVMQ MERKRKSDEA RIEREVQSQE KRIRKELEKQ DLLRRKREEQ MKKEMEKQDR 360 ERKKEELRMM REQQRKEERC QREEKREMER REKFMQKELL RAERKKQKEE LRREKEAARQ 420 KAAMERAAAR RIAKESLELI EDERLELMEL AASSKGLPSI VSLDYDTLQG LESFRESLCK 480 FPPESVKLKK PFAVRPWIDS EDNVGKLLMV WRFCITFADV LGLWPFTLDE FIQALHDYDS 540 RLLGEIHIAL LRMIIKDIED VVRTPSGGPG TNQYSAVNPE GGHPHIVEGA YVWGFDIRTW 600 QKHLNPLTWP EILRQFALSA GFGPQLKKKS TERGGLNDSE TKGCEDIVST LRNGSAAENA 660 VAIMQEKGFS LQRKSRHRLT PGTVKFAAYH VLALEGSKGL NVLELADKIQ KSGLRDLTTS 720 KTPEASISVA LSRDPILFER IAPSTYNVRP AYRKDPADAE AIISAAREKI QRFVNGVLTG 780 QNAEDEERDD DSDCDVAEGP EVDDLGTPSE ANKIGEGCNE AGTCSGNGKD ILSDDIAVEN 840 EFGSDGVSNS DQAAEIDESR SGEPWVQGLT EGEYSELSVE ERLNAVVILV GIANEGNSIR 900 VILEDRLDAA NAIKKQMWTE AQLDKRRMKE EIITKFSESN YGATAMEGSQ SPLGLVDNRN 960 GEASLDLMEK DEPAGGVDNA HNHVDTLAIE KSSFTNDASF AQISNSIQQN NFTAERSRMQ 1020 MKAFIGHIAE EMYVYRSLPL GSDRRRNRYW LFVASPSSHD PGSGRIFVES PDGFWRLLDS 1080 EEAFDALSTS LDMRGIRESH LHIMLQKIEV PFRERVRKNL SFNCIEGKEG MKTGDELAEV 1140 SSSPGCNSGL DSPSSTVCGM NSDSLEPSSS FKIELGRNET ERENALKRYE DFQIWMWREC 1200 FNSSVLRSLT YGKNRCTPLL GTCHLCFDSY MNVECHGHSC HTTSKVGNKE GLVEQTIHEE 1260 KVKVEPLNFG DSNSSHPLRI RLIKVLLNSL EASVPHNALQ SSWTGDLRKI WAAKLLNASR 1320 TDDLLQILTQ FEGAIKRDYL SSSFETTEEL LCYCASSKVS GYDFAHRGSV SQLPWIPQTT 1380 SAVALRLLEL DTSILHGQHE KPKLPDEKKV ENLIKVPSKY SNTGDTQKVP TTDSKRDKQQ 1440 LKEETWDYTG NASGSSDHKQ VIRGRGSGRP RGRWPKGFAG SVSESGRRSL KHGGTLTEVL 1500 MRQGERSYGH KHGRGRRTVR KRRTEKKFSE ETLPGRLGDR GSIRIVSGLP RHTAGAERVV 1560 NKNVGETEDN SNSTDDGVDS DDNAAETRYD FGKWDAGFTV APHRNSEVME MSDEEGDDSE 1620 DDNGGDEDGE GDIGINDYDS DRQGDDNVDD EGSDSLVSGD YSD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 82 | RRLKDKKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | HB-other family protein |