PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027159038.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 662aa MW: 73448.8 Da PI: 6.2612

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027159038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.6	4.8e-23	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_027159038.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_027159038.1 218 SGELRVGVRR 227 999***97 PP
2	Auxin_resp	110.1	2.3e-36	253	336	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdl.dpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm fe+e+++err+sGt+vgv + ++rWp+S+WrsLk XP_027159038.1 253 ASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMTFEGEEVPERRFSGTIVGVGENnTSSRWPDSQWRSLK 336 789*************************************************************8751578*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MAHVAANHFS GGPNPGSPND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTL 60 QGLDHQLPSF NLPPKILCKV MNVNLRAEAE TDEVYAQITL LPDLDQGEVT SPDPPLPEPE 120 RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGESGE LRVGVRRLMR QPSNMPSSVI 240 SSHSMHLGVL ATASHAISTG TLFSVFYKPR TSRSEFIVSV NKYLEAQSHK LSVGMRFKMT 300 FEGEEVPERR FSGTIVGVGE NNTSSRWPDS QWRSLKVQWD EPSSIVRPDR VSPWEIEPLV 360 AATPPNPLPP QRNKRARPPV LPLAMQDLSS LGVWKSSVEP LYCDTSRSHD FYPSPKLSAA 420 TKASNLGYSD IKSMFWSNQV ETATESVAPV TEKRQVNGYR LFGIELLERA TVEDTSAVVA 480 SGAVEGDQPH LSRDSGSDQL SEPSHPNRSD VPSVSCDPEK SCLRSPHESQ SRQIRSCTKV 540 HMQGIAVGRA VDLTRFEGYD DLLKKLEEMF EIDGELFGST KKWQVVYADD EDDMMMVGDD 600 PWHEFCGMVR KIYIYTSEEA KKLSPKIKLP VGEVKSSKAA TDVVALGTEE QSSNVGSGGH 660 SC

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MAHVAANHFS GGPNPGSPND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTL  60
QGLDHQLPSF NLPPKILCKV MNVNLRAEAE TDEVYAQITL LPDLDQGEVT SPDPPLPEPE  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGESGE LRVGVRRLMR QPSNMPSSVI  240
SSHSMHLGVL ATASHAISTG TLFSVFYKPR TSRSEFIVSV NKYLEAQSHK LSVGMRFKMT  300
FEGEEVPERR FSGTIVGVGE NNTSSRWPDS QWRSLKVQWD EPSSIVRPDR VSPWEIEPLV  360
AATPPNPLPP QRNKRARPPV LPLAMQDLSS LGVWKSSVEP LYCDTSRSHD FYPSPKLSAA  420
TKASNLGYSD IKSMFWSNQV ETATESVAPV TEKRQVNGYR LFGIELLERA TVEDTSAVVA  480
SGAVEGDQPH LSRDSGSDQL SEPSHPNRSD VPSVSCDPEK SCLRSPHESQ SRQIRSCTKV  540
HMQGIAVGRA VDLTRFEGYD DLLKKLEEMF EIDGELFGST KKWQVVYADD EDDMMMVGDD  600
PWHEFCGMVR KIYIYTSEEA KKLSPKIKLP VGEVKSSKAA TDVVALGTEE QSSNVGSGGH  660
SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein