PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027158619.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 301aa    MW: 33233.5 Da    PI: 4.5107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027158619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08180224655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r+RR++i ++ +eL +l+P       +K++ ae+ + A +YIk Lq
  XP_027158619.1 180 SIAARQRRRKITEKTQELGKLIPGG-----QKMNTAEMFQAASKYIKFLQ 224
                     6788*******************86.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MALSCYSNWG ELEQYHDSEM TLQFAQPPAA ELSPELLGFN HMNFAFSDPY LDPILESQDL  60
VYSHNYTSLL PYFSSPSDEN SNSLYSLVPE VFPELEYQPC HSAKRQKIFE GCYNNSEVLP  120
SSFGSRFIPN PPLIQELSPP EILSPFSGSL ASKPPVFCSG STGEMTVKKA SNGGTLSSQS  180
IAARQRRRKI TEKTQELGKL IPGGQKMNTA EMFQAASKYI KFLQAQVGIL ETLASVQENG  240
KSLQNEELNP LLGSSLIQEK LYSMEMCLAP QKFVQSLAED NGVELNTQAL NDCKELIGTG  300
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-28bHLH family protein