PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027158350.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 415aa MW: 46682.5 Da PI: 5.0922

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027158350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.6e-15	56	115	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa+ ++ a++k++g XP_027158350.1 56 SIYRGVTRHRWTGRFEAHLWDkTTWNAiqtKKgRQIYLGAYDNEEAAARTYDLAALKYWG 115 57*****************666699988557***********************98 PP
2	AP2	57.6	3.1e-18	158	210	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+++++g+ XP_027158350.1 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAMAYDLAALEYRGP 210 89**99******99966...3.6************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MKRPHSSCSP SSSCIELKKS RTTKHASSSS RAKRDKKKSQ ISADASSSPI AARRSSIYRG 60 VTRHRWTGRF EAHLWDKTTW NAIQTKKGRQ IYLGAYDNEE AAARTYDLAA LKYWGPGTIL 120 NFPLENYSEE LEEMEKLTKE EYLTTLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF 180 GNKYLYLGTY GTQEEAAMAY DLAALEYRGP NAVTNFDISR YADKLKTFQK MHTENPESST 240 EKQVDEQEDH EEQVQEEKPV AELNVPNIAT TKSESQDNLG QHLQQKKPVA EPTVSNVAAT 300 EPEQIVMMDP ADEHEDHWNL CLDTALNSLP VSDITFEKTA ELPNLFTDAG FEASIDFIFD 360 APFDIDEFIE EDAAGSPAFE IDVDSFLRGE EKEPEATTSP SQSSSSTITS VGSNI

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MKRPHSSCSP SSSCIELKKS RTTKHASSSS RAKRDKKKSQ ISADASSSPI AARRSSIYRG  60
VTRHRWTGRF EAHLWDKTTW NAIQTKKGRQ IYLGAYDNEE AAARTYDLAA LKYWGPGTIL  120
NFPLENYSEE LEEMEKLTKE EYLTTLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  180
GNKYLYLGTY GTQEEAAMAY DLAALEYRGP NAVTNFDISR YADKLKTFQK MHTENPESST  240
EKQVDEQEDH EEQVQEEKPV AELNVPNIAT TKSESQDNLG QHLQQKKPVA EPTVSNVAAT  300
EPEQIVMMDP ADEHEDHWNL CLDTALNSLP VSDITFEKTA ELPNLFTDAG FEASIDFIFD  360
APFDIDEFIE EDAAGSPAFE IDVDSFLRGE EKEPEATTSP SQSSSSTITS VGSNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-72	AP2 family protein