PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027158338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 20396.3 Da PI: 10.1739 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.6 | 9.1e-15 | 22 | 58 | 3 | 39 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 i +++ r+ + kRr+ ++KKA+ELS+LCd++va+i+ XP_027158338.1 22 IPSEITRKSILNKRRESLFKKANELSTLCDVNVALIV 58 66788899999*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MAWKLTQNIF NMTRKKIRHV EIPSEITRKS ILNKRRESLF KKANELSTLC DVNVALIVQD 60 LKQNDEVLWP SHEDVEEKVR RFINMPDFER YSKSKTQANY LSDLVENKYQ NVAKFSKKND 120 QRESGNYIFK LSNQSITAEK FDMRQTNGLI NLFSIVTNML GERKQEFDKL KQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 2e-12 | M-type_MADS family protein |