PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027157702.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 938aa MW: 104700 Da PI: 6.174

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027157702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	806	828	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H XP_027157702.1 806 YRCETCNKAFRSYQALGGHRASH 828 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence
MDCTEDQPPK FKHYCRICKK GFMCGRALGG HMRAHGIGDE GGSLDDDDVA SDWEDKFGGA 60 DRTCRRMYQL RTNPNRLKSC RICENCGKEF ASWKSFLEHG KCSSDDAESL VSSPGSDGEY 120 EGERKGCQWS KRKRSLRTKV GSFGSAYPSS EDEDLLLARC LVDLANARFE VEPEESCASA 180 SKEEERRINP VTAYFNTPLI ASRVPLDKPK GASKGLFECK ACKKVFNSHQ ALGGHRASHK 240 KVKGCFAAKQ DQQDDSSLAD DDVTIHDEFF PSKSPSSLQF EQGPTMAGAS RRKSKVHECT 300 ICHRVFSTGQ ALGGHKRCHW ITSNSQETSS LVKLQFNHDH MDHQILRQGP TLINKSETLD 360 LNIPATQGDH ELSGILRPQN PLSFEVSTDI RLHTWTPNLG AETKCDSQNC HHQNDDDQGN 420 ENDRHNDSNN INKNNINCSN GPIENADDEA DSKVELAKLS DLKDINLSGN SSQWLQVGIG 480 STARWVEDFV DSRLKFMTLG KDVYCSLSMH DLFVFLVKLG GEKKREEAKI FWWGEVDFGF 540 FDMEKHRCKL CFRSFANGRA LGGHMRSHMM NLCAATKAKQ EFIKEEHEEE EVMNINDERQ 600 ISEEFESVPS SSFSSSSSSE DEEINPKKKV DMVMDQEFCF GGVEVTAAAD SVVVQDRESE 660 TESSKNPICR RSKRVRKSRV SDAVQFSGYI NDSMAELKKP KSGKQGRFSC ELPFADAEPV 720 SSISDTTTEE VVAYCLMMLS RDKWKKEDNE EEAMYGGEEV EEEEAEEGKA DHEEPEKQKK 780 NKDAKSQYCH DFGVVKVTKS RTRGKYRCET CNKAFRSYQA LGGHRASHKR IKAHNSNSTE 840 EEVAGKIHEC PVCYRIFSSG QALGGHKRSH VMGAAAAAAA AAATTHVSIR TSPAAKPFSR 900 FGEAFIDLNL PAPVDDDEIS QIELSAVSDA EFVNPFKQ

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence

MDCTEDQPPK FKHYCRICKK GFMCGRALGG HMRAHGIGDE GGSLDDDDVA SDWEDKFGGA  60
DRTCRRMYQL RTNPNRLKSC RICENCGKEF ASWKSFLEHG KCSSDDAESL VSSPGSDGEY  120
EGERKGCQWS KRKRSLRTKV GSFGSAYPSS EDEDLLLARC LVDLANARFE VEPEESCASA  180
SKEEERRINP VTAYFNTPLI ASRVPLDKPK GASKGLFECK ACKKVFNSHQ ALGGHRASHK  240
KVKGCFAAKQ DQQDDSSLAD DDVTIHDEFF PSKSPSSLQF EQGPTMAGAS RRKSKVHECT  300
ICHRVFSTGQ ALGGHKRCHW ITSNSQETSS LVKLQFNHDH MDHQILRQGP TLINKSETLD  360
LNIPATQGDH ELSGILRPQN PLSFEVSTDI RLHTWTPNLG AETKCDSQNC HHQNDDDQGN  420
ENDRHNDSNN INKNNINCSN GPIENADDEA DSKVELAKLS DLKDINLSGN SSQWLQVGIG  480
STARWVEDFV DSRLKFMTLG KDVYCSLSMH DLFVFLVKLG GEKKREEAKI FWWGEVDFGF  540
FDMEKHRCKL CFRSFANGRA LGGHMRSHMM NLCAATKAKQ EFIKEEHEEE EVMNINDERQ  600
ISEEFESVPS SSFSSSSSSE DEEINPKKKV DMVMDQEFCF GGVEVTAAAD SVVVQDRESE  660
TESSKNPICR RSKRVRKSRV SDAVQFSGYI NDSMAELKKP KSGKQGRFSC ELPFADAEPV  720
SSISDTTTEE VVAYCLMMLS RDKWKKEDNE EEAMYGGEEV EEEEAEEGKA DHEEPEKQKK  780
NKDAKSQYCH DFGVVKVTKS RTRGKYRCET CNKAFRSYQA LGGHRASHKR IKAHNSNSTE  840
EEVAGKIHEC PVCYRIFSSG QALGGHKRSH VMGAAAAAAA AAATTHVSIR TSPAAKPFSR  900
FGEAFIDLNL PAPVDDDEIS QIELSAVSDA EFVNPFKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-43	C2H2 family protein