PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027157618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 869aa MW: 97219.3 Da PI: 8.413 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 20 | 1.5e-06 | 236 | 254 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+++CH G+Cp C+ XP_027157618.1 236 CGSHRCGEICHDGDCPMCR 254 ******************8 PP | |||||||
2 | zf-NF-X1 | 18.1 | 6e-06 | 396 | 415 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ XP_027157618.1 396 CGRHACKRRCCDGDCPPCSE 415 ******************85 PP | |||||||
3 | zf-NF-X1 | 16.4 | 2e-05 | 425 | 442 | 3 | 20 |
zf-NF-X1 3 kHkCqklCHeGpCppCpq 20 +HkC ++CH+G C pCp+ XP_027157618.1 425 NHKCPAPCHRGACSPCPL 442 7***************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 869 aa Download sequence |
MATSNTTLLP PLSPPSSDSD SDSGTSSRQH QHTDLSCTIF KSYLELTGHQ SSPQHQDLIK 60 IQSFLTSSRS GALSCLICLE RIKPTDPTWS CSSRCFAVFH LLCIQSWAHQ SSNLAAARAA 120 SRAATLNDDT LRWHCPKCRI EYPKLQTPKY YYCFCGKLEN PPHDPWILPH SCGEICGRPL 180 TYNCGHECLL LCHPGPCPSC PKLVKTKCYC GAKEDVRRCG FKDFSCKGVC RKTLACGSHR 240 CGEICHDGDC PMCRKKGVYK CQCGKVELER ECCERIFRCE NPCQKLLGCG RHVCERGCHK 300 GKCGECPLQG KRTCPCGKRV YEGMACDVAV PLCGATCDKL LSCGFHRCPE RCHRGPCIET 360 CRTVVTKSCR CGSARKQIPC YQDLTCERKC QNVRDCGRHA CKRRCCDGDC PPCSEICDRR 420 LRCRNHKCPA PCHRGACSPC PLMVMISCSC GETHFEVPCG TETEQKPPKC PKRCRVAPLC 480 THRLICKPHK CHYGACPPCR LICDEEYSCG HKCKLRCHGP RPPALPEFTL KPKKKKSSHE 540 AEHTPGTLCP PCPELLWRSC VGNHIGAERM MICSNPAEFS CDNLCGTLLS CGNHYCTKIC 600 HALKSDSKSY SSVLAESCEE CNLPCQKERS PPCLHPCPLV CHPGECPPCH SLLKRACHCG 660 AMVHALKCIY YNSLDEREQM AVRSCGGPCH RKLPNCTHLC PEICHRGQCP SPDKCSKKVI 720 VRCGCQTLKK EWSCKDVQEA YRNAGSDPKD VPKTHFGLGL LRCDTDCRSK MKITDSELQL 780 RKSVVTQKKE PDGEKPVAKR RRRRERVQED KKVSRLQVIS GATRKVLLIV IILVTLIAVA 840 YCGYNGLLWL SDWMNEAELQ RQRRIYPRI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 799 | 804 | KRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | NF-X1 family protein |