PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027156423.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 164aa MW: 19047 Da PI: 9.3107

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027156423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.6	7.9e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvt+skRr+gi+KKA+E+ vLCda+v++iif+++gk++ey+s XP_027156423.1 9 KRIENSNNRQVTYSKRRTGIMKKAKEITVLCDAKVSLIIFGTSGKMHEYIS 59 79***********************************************86 PP
2	K-box	80.2	4.8e-27	71	160	1	90
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 yq+s+gk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL++keL+ Le++Le++l R+k++e++++ ++ + e+e+++ XP_027156423.1 71 YQRSTGKKLWDAKHENLSNEIDRVKKENDSMQIELRHLKGEDITSLNYKELMILEDALENGLAGLREKQSEIIKMIRKTGEMLEDENKQL 160 789999******************************************************************998877777777776654 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence
MGRGKIEIKR IENSNNRQVT YSKRRTGIMK KAKEITVLCD AKVSLIIFGT SGKMHEYISP 60 STNLVEMLDA YQRSTGKKLW DAKHENLSNE IDRVKKENDS MQIELRHLKG EDITSLNYKE 120 LMILEDALEN GLAGLREKQS EIIKMIRKTG EMLEDENKQL QYIW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-76	MIKC_MADS family protein