PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027155689.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 349aa MW: 38384.1 Da PI: 7.1936

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027155689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg++F++ L H +H XP_027155689.1 149 YECKTCGRTFPSFQALGGHRASH 171 99**********99999998887 PP
2	zf-C2H2	12.7	0.00039	223	245	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_027155689.1 223 HECSHCGAEFPSGQALGGHMRRH 245 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MVEAVEEVAG PQDLPHIVKG KRTKRQRPQS PIPFTITTQY SSSGEGGYVS NGDNCINNVN 60 NNTNNNNNHN NSSSSSAEEA RPDDHASNEE DEYTAKCLIL LAQGGDVIKE PPAINKFDQA 120 QDFGTEKFNS KRYIEAPISG NGKAGMYVYE CKTCGRTFPS FQALGGHRAS HKKPKNMTIF 180 KNGKNKSNYN NSSPLSLELI NNNNRGTSSN SNLYKSASFP KIHECSHCGA EFPSGQALGG 240 HMRRHRGVPA MTSTTLSLGQ LSPETTDQDS DEAEANKRTS NGLSLDLNLP APEDDHHNKD 300 PNKFSLASKH QQIPYQHQQQ NQKEEEEKEA EAKPALVLSS TPKLVRCHY

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MVEAVEEVAG PQDLPHIVKG KRTKRQRPQS PIPFTITTQY SSSGEGGYVS NGDNCINNVN  60
NNTNNNNNHN NSSSSSAEEA RPDDHASNEE DEYTAKCLIL LAQGGDVIKE PPAINKFDQA  120
QDFGTEKFNS KRYIEAPISG NGKAGMYVYE CKTCGRTFPS FQALGGHRAS HKKPKNMTIF  180
KNGKNKSNYN NSSPLSLELI NNNNRGTSSN SNLYKSASFP KIHECSHCGA EFPSGQALGG  240
HMRRHRGVPA MTSTTLSLGQ LSPETTDQDS DEAEANKRTS NGLSLDLNLP APEDDHHNKD  300
PNKFSLASKH QQIPYQHQQQ NQKEEEEKEA EAKPALVLSS TPKLVRCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-63	C2H2 family protein