PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154952.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 793aa MW: 92001.8 Da PI: 8.8279

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66	9.7e-21	56	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ ++g r++vC +eg+r+e+ + ++++r+ +a trtgC a+++vk ++ + k++vt++ eHnH+la XP_027154952.1 56 EFYNLYAKLSGFGIRKSNAKRD-EDGISRFRKWVCCCEGYRNEKWFNyEDRKREAKAITRTGCGACFRVKYDTeSVKYVVTRFIMEHNHPLA 146 6**************98887.8898999********9988767889999*************9899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence
MSFDLNQEPE CDRDTCSEES GGSIGGHEDE EADELVGAIG VDDVMKLTFD TEEAGEFYNL 60 YAKLSGFGIR KSNAKRDEDG ISRFRKWVCC CEGYRNEKWF NYEDRKREAK AITRTGCGAC 120 FRVKYDTESV KYVVTRFIME HNHPLASEAS VQHLRSHRKV SDAEYAQAKS LKLVGARICQ 180 IMKHFVIKAR GYSNVGFCIK DLYNRMDEER RKDIFNGDAE GALGFLAAKK DADDMFFYKY 240 HVDNEGRLAR LFWADSKSRV DFSVFGDVLV FDTTYKTNKY RKPLVVLAGV NNHLNSTIFG 300 CALLSDERIE TYEWVLSTFV EAMKGRKPVA VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH 360 RNARSNIRCE EFNNRLYDLM ARKFSTLEFE DRWARLVNEC GVVENEWVKK LYRRRRLWAE 420 AYLRGHFFAG MRSTQRCEKM NAFLNEYLNE KMRLYEFVRS FDLAIAWLRH TESKAVHTSE 480 NTKPVLTTIL PELEGSAAVV FTRNVFFMVR KHLNRQGLLI SEGWSEDGGS RTYYYSKYGG 540 HEISWRVVYD RSMEKLICSC MKFESKGIPC AHMFRVMVVE GMNRIPEACI SKRWTKGVYS 600 TNNGMKAFVA DEQLTQMARY GTLKSSCNSM CYYASYMDDA FNDLQQMFDK HSVDLKEKWI 660 ERGYGGDGFA MDSRVMNDRS RRTFGLLDPR VSRCKGDQKH AETKKKRKCG HCRQATTNEH 720 AHTKRIRTTQ QFMMIIWKIV WMNRWKNQLK LVRGGATQAN GEDKHLHHKH AVAVEGTQVT 780 NKEVQEKDEA QLL

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence

MSFDLNQEPE CDRDTCSEES GGSIGGHEDE EADELVGAIG VDDVMKLTFD TEEAGEFYNL  60
YAKLSGFGIR KSNAKRDEDG ISRFRKWVCC CEGYRNEKWF NYEDRKREAK AITRTGCGAC  120
FRVKYDTESV KYVVTRFIME HNHPLASEAS VQHLRSHRKV SDAEYAQAKS LKLVGARICQ  180
IMKHFVIKAR GYSNVGFCIK DLYNRMDEER RKDIFNGDAE GALGFLAAKK DADDMFFYKY  240
HVDNEGRLAR LFWADSKSRV DFSVFGDVLV FDTTYKTNKY RKPLVVLAGV NNHLNSTIFG  300
CALLSDERIE TYEWVLSTFV EAMKGRKPVA VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH  360
RNARSNIRCE EFNNRLYDLM ARKFSTLEFE DRWARLVNEC GVVENEWVKK LYRRRRLWAE  420
AYLRGHFFAG MRSTQRCEKM NAFLNEYLNE KMRLYEFVRS FDLAIAWLRH TESKAVHTSE  480
NTKPVLTTIL PELEGSAAVV FTRNVFFMVR KHLNRQGLLI SEGWSEDGGS RTYYYSKYGG  540
HEISWRVVYD RSMEKLICSC MKFESKGIPC AHMFRVMVVE GMNRIPEACI SKRWTKGVYS  600
TNNGMKAFVA DEQLTQMARY GTLKSSCNSM CYYASYMDDA FNDLQQMFDK HSVDLKEKWI  660
ERGYGGDGFA MDSRVMNDRS RRTFGLLDPR VSRCKGDQKH AETKKKRKCG HCRQATTNEH  720
AHTKRIRTTQ QFMMIIWKIV WMNRWKNQLK LVRGGATQAN GEDKHLHHKH AVAVEGTQVT  780
NKEVQEKDEA QLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	412	417	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-95	FAR1 family protein