PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154807.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-X1

Protein Properties

Length: 409aa MW: 45708.9 Da PI: 8.4423

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	17.1	1.2e-05	184	202	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCp+Cp+ XP_027154807.1 184 CG-HECLLLCHPGPCPSCPK 202 .*************96 PP
2	zf-NF-X1	21.2	6.4e-07	236	254	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+++CH G+Cp C+ XP_027154807.1 236 CGSHRCGEICHDGDCPMCR 254 ******************8 PP
3	zf-NF-X1	17.5	9e-06	289	308	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ CH+G+C++Cp+ XP_027154807.1 289 CGRHVCERGCHKGNCGECPL 308 ******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MATSNTTLLP PLSPPFSDSD SDSGTSSRQH QHTDLSSTIF KSYLELTGHQ SSPQHQDLIK 60 IQSFLTSSRS GALSCLICLE RIKPTDPTWS CSSRCFAVFH LLCIQSWAHQ SSNLAAARAA 120 SRAATLNDDT LRWHCPKCRI EYPKSQTPKY YYYFCGKLEN PPHDPWILPH SCGEICGRPL 180 TYNCGHECLL LCHPGPCPSC PKLVKTKCYC GAKEDVRRCG FKDFSCKGVC RKTLACGSHR 240 CGEICHDGDC PMCRKKGVYK CQCGKVELER ECCERIFRCE NPCQKLLGCG RHVCERGCHK 300 GNCGECPLQG KRTCPCGKRV YEGMACDVAV PLCGATCDKL LSCGFHRCPE RCHRGPCIET 360 CRTVVTKSCR CGSARKQSRF LVIKIQRRKK VDHILFDIFA PLLYSSTPY

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MATSNTTLLP PLSPPFSDSD SDSGTSSRQH QHTDLSSTIF KSYLELTGHQ SSPQHQDLIK  60
IQSFLTSSRS GALSCLICLE RIKPTDPTWS CSSRCFAVFH LLCIQSWAHQ SSNLAAARAA  120
SRAATLNDDT LRWHCPKCRI EYPKSQTPKY YYYFCGKLEN PPHDPWILPH SCGEICGRPL  180
TYNCGHECLL LCHPGPCPSC PKLVKTKCYC GAKEDVRRCG FKDFSCKGVC RKTLACGSHR  240
CGEICHDGDC PMCRKKGVYK CQCGKVELER ECCERIFRCE NPCQKLLGCG RHVCERGCHK  300
GNCGECPLQG KRTCPCGKRV YEGMACDVAV PLCGATCDKL LSCGFHRCPE RCHRGPCIET  360
CRTVVTKSCR CGSARKQSRF LVIKIQRRKK VDHILFDIFA PLLYSSTPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	1e-146	NF-X1 family protein