PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154670.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

RAV

Protein Properties

Length: 391aa MW: 43197.8 Da PI: 9.6545

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154670.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.4	8.6e-14	71	119	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g XP_027154670.1 71 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDIAAQRFRG 119 689*9788.8*****3.....5***********************98 PP
2	B3	102.1	3.2e-32	202	301	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ +++ XP_027154670.1 202 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGNTSKGVLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGADKQ 296 89**************************88999**************************************************87656666 PP .EEEE CS B3 92 lvvkv 96 l++ + XP_027154670.1 297 LYIDW 301 77766 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MDNSSIDEST TSENSFASSA APASLSNMTL PVNIKSSPEQ QSLCRVGSGA SSMIIDAEVG 60 VEAESRKLPS SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAARAY DIAAQRFRGR 120 DAVTNFKPLN EAEEDDVEAA FLSCHSKAEI VDMLRKHTYN DELEQSKRNY GLDGNGKKGC 180 KGIAGLHSFG SQRTTKAREQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSGNTSKGVL 240 LNFEDMGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFQRS TGADKQLYID 300 WKPRNGADKQ LYIDWKQRNG AAEAAPVAAG ISIPIQPVQM VRLFGVNIFK VPLPVNGVVM 360 DSNSSCSGKR VRGMELLGLE CSKKPRAIGA L

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MDNSSIDEST TSENSFASSA APASLSNMTL PVNIKSSPEQ QSLCRVGSGA SSMIIDAEVG  60
VEAESRKLPS SRFKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAARAY DIAAQRFRGR  120
DAVTNFKPLN EAEEDDVEAA FLSCHSKAEI VDMLRKHTYN DELEQSKRNY GLDGNGKKGC  180
KGIAGLHSFG SQRTTKAREQ LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QSGNTSKGVL  240
LNFEDMGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDIVSFQRS TGADKQLYID  300
WKPRNGADKQ LYIDWKQRNG AAEAAPVAAG ISIPIQPVQM VRLFGVNIFK VPLPVNGVVM  360
DSNSSCSGKR VRGMELLGLE CSKKPRAIGA L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-143	RAV family protein