PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154656.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 387aa MW: 44024.2 Da PI: 5.5404

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.9	9e-26	58	134	2	77
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 W ++e++ Li++rre++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk+k++++++ ++++s XP_027154656.1 58 WVQDETRSLIAFRREVDALFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKLKQQDRGNnNCNNSG 134 *****************************************************************999874466554 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MYLAHRPRPI DSYKDLSSEE LVMDITPHVD LQQQQMILAD SGGEDHELRA PKKRAETWVQ 60 DETRSLIAFR REVDALFNTS KSNKHLWEQI SSKMREKGFD RSPTMCTDKW RNLLKEFKKL 120 KQQDRGNNNC NNSGSASSAN KMWYYKELEE LLRDRAKNGS YKSPPPPPPS AKVEAYIHFP 180 DKGGLEDGSI PFGSVEENGR ASVNLETPLD NDGDPLTITA ADAVTANEVP PWNWRTSPDA 240 GSDGHPSYGG RVITVKWGEY RRRIGIDGTA DAIKEAIKSA FSLRTKRAFW LEDEDSIIRT 300 IDRDMPLGNY TLHLDEGISF KVCLYNESDR LAVHTEDKTL YTEDDFRDFL TRRGLIGLRE 360 IDGYRCFSNI DDLRPGAVYQ GVRLLGD

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MYLAHRPRPI DSYKDLSSEE LVMDITPHVD LQQQQMILAD SGGEDHELRA PKKRAETWVQ  60
DETRSLIAFR REVDALFNTS KSNKHLWEQI SSKMREKGFD RSPTMCTDKW RNLLKEFKKL  120
KQQDRGNNNC NNSGSASSAN KMWYYKELEE LLRDRAKNGS YKSPPPPPPS AKVEAYIHFP  180
DKGGLEDGSI PFGSVEENGR ASVNLETPLD NDGDPLTITA ADAVTANEVP PWNWRTSPDA  240
GSDGHPSYGG RVITVKWGEY RRRIGIDGTA DAIKEAIKSA FSLRTKRAFW LEDEDSIIRT  300
IDRDMPLGNY TLHLDEGISF KVCLYNESDR LAVHTEDKTL YTEDDFRDFL TRRGLIGLRE  360
IDGYRCFSNI DDLRPGAVYQ GVRLLGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-159	Trihelix family protein