PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027154612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 29311.7 Da PI: 9.1899 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9.1e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F ++ L H++ H XP_027154612.1 94 FVCQYCLKCFANSQALGGHQNAH 116 89******************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MEKGISNLSS PSCNNGEKKA YAEKPSVEKK LKLFGFELDP CRNGDHNDLK GLFENDESVN 60 SSSSTVSSGR DQILDQNLPK EKTPPREPAD DKKFVCQYCL KCFANSQALG GHQNAHKKER 120 MRKKRLQLQA RKASLSYYLQ PFQNRHSFNF YASSPLYHDP SFSAPHEFTI SEESQISFSS 180 RYDQDANMVN GSHVSRSWYA LPSAQAPFQQ DSASCKFTLT HVDKSRENRA VIKPSSPLPR 240 SKQNCRSVDL QLGLSLHSTI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 1e-13 | C2H2 family protein |