PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154376.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 524aa MW: 57780.2 Da PI: 6.7654

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.8e-17	171	220	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_027154376.1 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220 78*****************......55**********************997 PP
2	AP2	43.7	6.7e-14	263	313	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_027154376.1 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 313 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MWDLNDSPDQ RWDDESEGCS SPVDGDDDKG KRVGSVSNSS SSAVVIEDGY SDEEVGELRG 60 GSRKRGTSTS RIFGFAVSAH NDDNCSSESD QPPVTRQFFP VDESDMGVGT SSGGCNEGAS 120 SGSGVPDLPR APWVGVKFCQ SEPLGGGVLG KSTEVSQPLK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSLA DYEDDLKQMS 240 NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA 300 ARAYDKAAIK CNGKDAVTNF DPSIYEDELN SSESGGGAAD HNLDLSLGNS ASKLSSHRGM 360 APNVDRSKDQ HSASMHFQVD WRHHGFRSKE NPNDVESSRR DGYSEAETVQ LLSQTHLHSP 420 GSMKPKEIQN YGQFRRGGES HIFQMLPPQF NSSNYHFQFP SSSNGGLIGA NGDLSLSTSD 480 PHWQYNPPHF YGTAAASSGF PQQIVRPQDW TQKNGFHHHL MRPS

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MWDLNDSPDQ RWDDESEGCS SPVDGDDDKG KRVGSVSNSS SSAVVIEDGY SDEEVGELRG  60
GSRKRGTSTS RIFGFAVSAH NDDNCSSESD QPPVTRQFFP VDESDMGVGT SSGGCNEGAS  120
SGSGVPDLPR APWVGVKFCQ SEPLGGGVLG KSTEVSQPLK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VEADINFSLA DYEDDLKQMS  240
NLTKEEFVHV LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA  300
ARAYDKAAIK CNGKDAVTNF DPSIYEDELN SSESGGGAAD HNLDLSLGNS ASKLSSHRGM  360
APNVDRSKDQ HSASMHFQVD WRHHGFRSKE NPNDVESSRR DGYSEAETVQ LLSQTHLHSP  420
GSMKPKEIQN YGQFRRGGES HIFQMLPPQF NSSNYHFQFP SSSNGGLIGA NGDLSLSTSD  480
PHWQYNPPHF YGTAAASSGF PQQIVRPQDW TQKNGFHHHL MRPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-128	AP2 family protein