PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027154029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26250.6 Da    PI: 8.3046
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027154029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009.5e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_027154029.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP

2K-box87.62.5e-2981166792
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                     ++ +++ ++s+++e+ kLk ++e+Lqr qRhllG+dL++L++++L++Le+qLe+slk +Rs++++++l+q+++lq k +++  en+
  XP_027154029.1  81 SHSAKEIEQSSYKEYLKLKGKYESLQRYQRHLLGDDLGPLNINDLEHLEHQLESSLKLVRSTRTQVMLDQLSDLQTKLEDIYAENH 166
                     4466777899*********************************************************************9999987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SNMLRTLERY QRCSYGAVEV SHSAKEIEQS SYKEYLKLKG KYESLQRYQR HLLGDDLGPL  120
NINDLEHLEH QLESSLKLVR STRTQVMLDQ LSDLQTKLED IYAENHLHQS WGGGGEQSNT  180
YSQQHSQSQG FFQPLECSSG LQIGYNPASS SQITAVTNAQ NVSGLVPGWM L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.17e-81MIKC_MADS family protein