PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027153948.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23562.1 Da PI: 9.1057 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+k rqvtfskRr g++KKA+ELSvLCd++vav+ifs +gkly+++s XP_027153948.1 9 KKIEDKNSRQVTFSKRRSGLMKKAKELSVLCDVDVAVLIFSGRGKLYDFCS 59 68***********************************************96 PP | |||||||
2 | K-box | 48.9 | 2.7e-17 | 100 | 171 | 28 | 99 |
K-box 28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + L++ R l d++ L+l eL qLe+qLe++l + Rs+K++ll+e+i l + ek+l+eenk L++k++ XP_027153948.1 100 RKLLEKVERDLEEPDVDHLNLSELVQLEEQLEDALIQTRSRKTRLLMESITSLSEVEKMLREENKLLQNKVA 171 456778888999999******************************************************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence |
MGRRKVEIKK IEDKNSRQVT FSKRRSGLMK KAKELSVLCD VDVAVLIFSG RGKLYDFCST 60 NSLAKILQRY RNYAEAEDGS ARISGVEKRN PEGRNVVTIR KLLEKVERDL EEPDVDHLNL 120 SELVQLEEQL EDALIQTRSR KTRLLMESIT SLSEVEKMLR EENKLLQNKV AAGTSNEKRN 180 DLILEFGDLT HVGMISGQRQ AMLELL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65050.2 | 3e-39 | MIKC_MADS family protein |