PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027153536.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27658.8 Da    PI: 10.4329
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027153536.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.6e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_027153536.1  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP

2K-box972.9e-32831749100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        +++ +++ e+ kL ++ie Lqr+++h++GedL+sLsl+eLq LeqqL++++++iR++Kn++++e+i el+kkek lqe+n  L k+++e
  XP_027153536.1  83 SGPEQQDNWSVEHPKLMSRIELLQRNIKHYVGEDLDSLSLRELQTLEQQLDTAMRRIRTRKNQVMHESIAELRKKEKTLQEQNSLLAKQIKE 174
                     5567789**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD AEVALIVFST KGKLFEYSTE  60
SSMERILERY ERYSYAEKRL SGSGPEQQDN WSVEHPKLMS RIELLQRNIK HYVGEDLDSL  120
SLRELQTLEQ QLDTAMRRIR TRKNQVMHES IAELRKKEKT LQEQNSLLAK QIKENDKIVM  180
ERLHLIQRSS ALVLSEPAPG SVPVPSLAAG SPFQVSGPTG EEDGRRGKNT LMPPWLVRRM  240
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-91MIKC_MADS family protein