PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027153395.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 423aa    MW: 47044.7 Da    PI: 8.318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027153395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-066082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_027153395.1 60 YVCEICNQGFQRDQNLQMHRRRH 82
                    9*********************9 PP

2zf-C2H216.13.1e-05137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k +  +s++k H++t+
  XP_027153395.1 137 WVCEKCSKGYAVQSDYKAHLKTC 159
                     58*******************98 PP

3zf-C2H2110.0013167185523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  XP_027153395.1 167 DCGRVFSRVESFIEHQDTC 185
                     9***************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    
MLDNNTASNG PSSSSDAFTS SDNNGVVITN KRKRRPAGTP DPDAEVVSLS PKTLLESDKY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETPEVKKRV FVCPEPSCLH HDPCHALGDL  120
VGIKKHFRRK HSNNKQWVCE KCSKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE  180
HQDTCTVRPV QPDVQAMQPA CSSHAASSNS PSSDNNFSVA PKPRLIMPAP SGHQPQFVCS  240
EANNLTGKVQ QHSLELQLLP SSYKDEDNHA TDLNLSIGSS RHCEKNEQKC SNLDVSTRSS  300
HGGEKLVMDA SRMKQGATEQ LRVAMAEKAF AEQARQQAKR QLELAEMEFS NAKRIRQQAQ  360
AELEKAQVLK EQATKKISET ISEITCHACR QRFQATNVTH VSADETSPAM SYMSSATTDA  420
EGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136KRKRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-152C2H2 family protein