PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027153395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 423aa MW: 47044.7 Da PI: 8.318 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.9e-06 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_027153395.1 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.1 | 3.1e-05 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_027153395.1 137 WVCEKCSKGYAVQSDYKAHLKTC 159 58*******************98 PP | |||||||
3 | zf-C2H2 | 11 | 0.0013 | 167 | 185 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ XP_027153395.1 167 DCGRVFSRVESFIEHQDTC 185 9***************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence |
MLDNNTASNG PSSSSDAFTS SDNNGVVITN KRKRRPAGTP DPDAEVVSLS PKTLLESDKY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETPEVKKRV FVCPEPSCLH HDPCHALGDL 120 VGIKKHFRRK HSNNKQWVCE KCSKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE 180 HQDTCTVRPV QPDVQAMQPA CSSHAASSNS PSSDNNFSVA PKPRLIMPAP SGHQPQFVCS 240 EANNLTGKVQ QHSLELQLLP SSYKDEDNHA TDLNLSIGSS RHCEKNEQKC SNLDVSTRSS 300 HGGEKLVMDA SRMKQGATEQ LRVAMAEKAF AEQARQQAKR QLELAEMEFS NAKRIRQQAQ 360 AELEKAQVLK EQATKKISET ISEITCHACR QRFQATNVTH VSADETSPAM SYMSSATTDA 420 EGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 36 | KRKRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-152 | C2H2 family protein |