PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027153305.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 372aa MW: 43654.8 Da PI: 8.5517

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027153305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.1	1.8e-06	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg sF+ + +L++H+++H XP_027153305.1 64 TCEHCGVSFRKPAYLRQHMQSH 85 6*******************99 PP
2	zf-C2H2	15.8	4e-05	91	115	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC dC+ s++rk++L+rH+ H XP_027153305.1 91 FKCLvaDCHASYRRKDHLTRHLLQH 115 899999***************9887 PP
3	zf-C2H2	19.5	2.6e-06	159	183	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s L+rH +H XP_027153305.1 159 YVCTeiECGKVFKFASKLRRHEESH 183 99*******************9988 PP
4	zf-C2H2	15	7e-05	250	274	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++H + H XP_027153305.1 250 KCSfeGCLLSFSNKSNLNQHVKAvH 274 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MVEEKENKRP VIFRDIRRYY CEYCGICRSK KFLIASHILS HHQEELKQKE EENGQAKDEP 60 KMNTCEHCGV SFRKPAYLRQ HMQSHSFERP FKCLVADCHA SYRRKDHLTR HLLQHQGKLF 120 ECPLDSCKCR FVYQGNMKRH VKEFHYDSSS NDVTSPKQYV CTEIECGKVF KFASKLRRHE 180 ESHVKLDTVE AFCAEPGCMK FFTNGECLKE HVHSCHQYVI CETCGTRQLK KNFKRHLCSH 240 EAGCSQSKVK CSFEGCLLSF SNKSNLNQHV KAVHLGLQPF PCRFPSCGMK FSFKHVRDNH 300 EKSGRHVFTR GDFEESDEQF RSRPRGGRKR QYPVIETLMR KRIVPPCESD PILNEASDYL 360 SRFFSTESED EL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MVEEKENKRP VIFRDIRRYY CEYCGICRSK KFLIASHILS HHQEELKQKE EENGQAKDEP  60
KMNTCEHCGV SFRKPAYLRQ HMQSHSFERP FKCLVADCHA SYRRKDHLTR HLLQHQGKLF  120
ECPLDSCKCR FVYQGNMKRH VKEFHYDSSS NDVTSPKQYV CTEIECGKVF KFASKLRRHE  180
ESHVKLDTVE AFCAEPGCMK FFTNGECLKE HVHSCHQYVI CETCGTRQLK KNFKRHLCSH  240
EAGCSQSKVK CSFEGCLLSF SNKSNLNQHV KAVHLGLQPF PCRFPSCGMK FSFKHVRDNH  300
EKSGRHVFTR GDFEESDEQF RSRPRGGRKR QYPVIETLMR KRIVPPCESD PILNEASDYL  360
SRFFSTESED EL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-130	C2H2 family protein