PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027153132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 297aa MW: 33523.5 Da PI: 5.8026 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 83 | 135 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k XP_027153132.1 83 KKRLNLEQVKVLEKSFELGSKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 135 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.6 | 1.9e-39 | 81 | 172 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eqvk+LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkq+Ekdye+Lkr+++ lk++ne L++++++ ++el XP_027153132.1 81 EKKKRLNLEQVKVLEKSFELGSKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQMEKDYEVLKRQVEILKADNELLRAQNKRFHSELV 172 69************************************************************************************999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence |
MIHGNMETFF PVDSMFQNHQ DHDRLPSSNN PSAPCTAHHD FPGISGALMR RSMSFSGVDM 60 SEEALRLEDD MSDDGAAPLG EKKKRLNLEQ VKVLEKSFEL GSKLEPERKM QLARALGLQP 120 RQVAIWFQNR RARWKTKQME KDYEVLKRQV EILKADNELL RAQNKRFHSE LVALQSVELS 180 AAVEPINLNN RENEASWSSG SRENSIDVNL GTTSVETGLI IPNSHPTSNH MPFPSTMEQP 240 AVGPTHHLLQ ASLGPDLQGP RIDQTTSDEA LCNAFNNIEE QPSFSPWSTW PNQQNFR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01220.1 | 9e-66 | HD-ZIP family protein |