PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152718.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 352aa MW: 38494.1 Da PI: 5.6308

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.6	8.2e-17	153	253	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f+k+l +sdv+ ++r+vlpk+ aee+ ++++e++ +t+ d +g +W++k+++ +++s++y+++ ++ Fvk +gL+ gD +v++ ++ + XP_027152718.1 153 FEKELQRSDVGPLRRIVLPKRAAEEYlpVLESKEGMFITMDDMDGnHVWRLKFRFwpNNNSRMYLFE-NTGVFVKTHGLRHGDYIVLY--QDlVG 244 89************************55666899**998799*99777777777776.******************..67688 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++v+++++ XP_027152718.1 245 RNYVIQARK 253 888888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MDMETTEAYG MVSSATELLS FVTKQAVENT NNPGHFDHGV VVPGGAAGGS GGLGSSSGGN 60 VGGGPGSTGE GSLKMNSGQK KKRISRVKRS SMSTLRLPFD TTTSSSNASQ FVPARVFFGE 120 GGTEILLRLS VKFGPWLNQS YKVIDPTRLR FLFEKELQRS DVGPLRRIVL PKRAAEEYLP 180 VLESKEGMFI TMDDMDGNHV WRLKFRFWPN NNSRMYLFEN TGVFVKTHGL RHGDYIVLYQ 240 DLVGRNYVIQ ARKASDSVVH DTSGHGAQGI LSDYAASDVV QGPESEINAS GYIPEMFPPV 300 NEMGDMSFIY DTSFSNDSPL DYLGGPMTDF SRVGGHESNF GSIDNLSLDD FF

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MDMETTEAYG MVSSATELLS FVTKQAVENT NNPGHFDHGV VVPGGAAGGS GGLGSSSGGN  60
VGGGPGSTGE GSLKMNSGQK KKRISRVKRS SMSTLRLPFD TTTSSSNASQ FVPARVFFGE  120
GGTEILLRLS VKFGPWLNQS YKVIDPTRLR FLFEKELQRS DVGPLRRIVL PKRAAEEYLP  180
VLESKEGMFI TMDDMDGNHV WRLKFRFWPN NNSRMYLFEN TGVFVKTHGL RHGDYIVLYQ  240
DLVGRNYVIQ ARKASDSVVH DTSGHGAQGI LSDYAASDVV QGPESEINAS GYIPEMFPPV  300
NEMGDMSFIY DTSFSNDSPL DYLGGPMTDF SRVGGHESNF GSIDNLSLDD FF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26790.1	2e-58	B3 family protein