PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027152657.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family AP2
Protein Properties Length: 396aa    MW: 44678.7 Da    PI: 7.8934
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027152657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.9e-1175131155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a+ k++g
  XP_027152657.1  75 SRFRGVSRHRWTGRFEAHLWDkLSWNIaqKKKGKQ-GAYDDEEAAARAYDLAAIKYWG 131
                     789******************88887784446666.99***9**************98 PP

2AP252.41.4e-16174225155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  XP_027152657.1 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 225
                     89****99**********99966...3.6*************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MSTLIKSEES PGRRRMCTAD AGAPGGRSVK RRRRDQQTAA ADAFPLACPG QQMQQQQLEQ  60
VVDLSSAPTT VKRSSRFRGV SRHRWTGRFE AHLWDKLSWN IAQKKKGKQG AYDDEEAAAR  120
AYDLAAIKYW GTSTFTNFPI TDYEKEIETM QTVTKEEYLA SLRRKSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW  240
LKPGVNPAAS AQESEPIIHP QTPPSHDFRA GETNQSFIFQ RSFSTGDLNK EEICERQLPV  300
YSCNKSSSPT ALGLLLRSSI FRELVAKNSI VSDEENDSES GKVQPQVVND EYLAEMFEDG  360
NGATPFGVTS ESYGIDLEEP FRFNYDCLEN PLQTRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRMCTADAGAPGGRSVKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-79AP2 family protein