PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027152657.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 396aa MW: 44678.7 Da PI: 7.8934 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.9 | 7.9e-11 | 75 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a+ k++g XP_027152657.1 75 SRFRGVSRHRWTGRFEAHLWDkLSWNIaqKKKGKQ-GAYDDEEAAARAYDLAAIKYWG 131 789******************88887784446666.99***9**************98 PP | |||||||
2 | AP2 | 52.4 | 1.4e-16 | 174 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_027152657.1 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 225 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence |
MSTLIKSEES PGRRRMCTAD AGAPGGRSVK RRRRDQQTAA ADAFPLACPG QQMQQQQLEQ 60 VVDLSSAPTT VKRSSRFRGV SRHRWTGRFE AHLWDKLSWN IAQKKKGKQG AYDDEEAAAR 120 AYDLAAIKYW GTSTFTNFPI TDYEKEIETM QTVTKEEYLA SLRRKSSGFS RGVSKYRGVA 180 RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW 240 LKPGVNPAAS AQESEPIIHP QTPPSHDFRA GETNQSFIFQ RSFSTGDLNK EEICERQLPV 300 YSCNKSSSPT ALGLLLRSSI FRELVAKNSI VSDEENDSES GKVQPQVVND EYLAEMFEDG 360 NGATPFGVTS ESYGIDLEEP FRFNYDCLEN PLQTRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 34 | RRRMCTADAGAPGGRSVKRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-79 | AP2 family protein |