PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027152587.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 384aa MW: 41351.5 Da PI: 6.1288 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 48 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +gr++AeIrdp++ + r++lg+f+taeeAa a+++a+++++g XP_027152587.1 48 SRFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 98 6788******.**********965...5*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence |
MDMSSSRGSK SNDEVVLSGN SAASPNSKSR RKNQQQQQQD QSSGGGSSRF LGVRRRPWGR 60 YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGSR ARTNFVYSDM PPGSSVTSIV 120 SPDESDSLMH HAHDHDLSSA GLVLFSNSPQ QHQHHQQQFL FFGGHHETSN NHFTPAGDGR 180 GHYWNKWNHH ATCGGVAAAA AGTGNSTNVI INSLFQQEED QNTNSAAAPG DSYDNMMSSF 240 LLYGNNSDDR SSSSSGAGAE LPPLPPDITS SYFGSPTSEP PLLLSDMGRG ILNDMSFLEL 300 SERPSRPSFS STQGIMEYHD LVNSGTTGTA TAAAAASAGS CDFVHPSSSD SFGADHANIL 360 DDHHHHLSCS STNNTINFSS FGWF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 3e-28 | ERF family protein |