PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027152584.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 193aa    MW: 21209.8 Da    PI: 6.1397
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027152584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY193.59.8e-6061642164
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     ++ +  +q+CyvqC++C+til+v+vP++sl+ vvtvrCGhCtsllsvn++ as l     hl   + ++ + +++v  +++++n   ++    ++
  XP_027152584.1   6 HLLDLQGQICYVQCGYCTTILLVNVPYSSLSAVVTVRCGHCTSLLSVNMTSASFLP---LHLFAPFDQSDQSTTQVCPQETDVNADDHKGLDMQI 97 
                     5677899*****************************************99887542...355667777888889999999999999988888899 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164
                     +s+ +s+ ++ee   ++ +++PPekrqr+Psaynrfi eeiqr+ka nP ++h++afs aak Wah+P
  XP_027152584.1  98 PSHVVSSPDEEEGE-TQAINKPPEKRQRAPSAYNRFIGEEIQRLKAINPTMTHKQAFSRAAKSWAHLP 164
                     99777666665555.6789************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MSTLNHLLDL QGQICYVQCG YCTTILLVNV PYSSLSAVVT VRCGHCTSLL SVNMTSASFL  60
PLHLFAPFDQ SDQSTTQVCP QETDVNADDH KGLDMQIPSH VVSSPDEEEG ETQAINKPPE  120
KRQRAPSAYN RFIGEEIQRL KAINPTMTHK QAFSRAAKSW AHLPLGLQKE GESQAGKDDD  180
ASFQSSRGFK TTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.16e-62YABBY family protein