PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027152542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 152aa MW: 17219.7 Da PI: 6.4835 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.5e-40 | 24 | 124 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C+++Cvlapyfp+++p +f++vhk++Gasn+++ l++lpe +r+da++s+vyeA ar+rdPvyG++g+++ lqqq+ l++ela XP_027152542.1 24 PCAACKSLRRRCSDKCVLAPYFPSSEPLRFNIVHKVYGASNIIRRLQELPEPQRSDAVNSMVYEAGARIRDPVYGCAGTVTLLQQQILGLQEELA 118 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++e+ XP_027152542.1 119 KAQAEI 124 *99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence |
MEHCRQQNTP PSPYQNATPP TQYPCAACKS LRRRCSDKCV LAPYFPSSEP LRFNIVHKVY 60 GASNIIRRLQ ELPEPQRSDA VNSMVYEAGA RIRDPVYGCA GTVTLLQQQI LGLQEELAKA 120 QAEILNMQCQ IANLVSLDWM EMFPSQEQET FN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-51 | LBD family protein |