PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027152537.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 384aa MW: 42985.2 Da PI: 7.7866

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027152537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl XP_027152537.1 14 KGTWTAEEDQKLLTYIERHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	53.2	7e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l XP_027152537.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MGRSPCCDKV GLKKGTWTAE EDQKLLTYIE RHGHGSWRAL PSKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPATHKPKT NAFGCSQQKD AANLSHMAQW ESARLEAEAR LVRESKLLSS IPYPTKPSFQ 180 PPCLDILKVW QATWTTTKNV TSTNGFFTSN GNLQSPNSTL NFSDNMFPVP RTNAGFGANV 240 AIPVMEYVEN SKQQVGSGTM TKQTVPNSWK PLGKLNQHDH QVEVGERMDM EVMDNAIQLD 300 DNDNIEYPNP DDAGYIAENS LRHQSFMEGF ASILSDDGNN STSPNGPCYN LDNSSCGGDL 360 EDNGKYWNNI LDNVVTFTSG SPIF

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MGRSPCCDKV GLKKGTWTAE EDQKLLTYIE RHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPATHKPKT NAFGCSQQKD AANLSHMAQW ESARLEAEAR LVRESKLLSS IPYPTKPSFQ  180
PPCLDILKVW QATWTTTKNV TSTNGFFTSN GNLQSPNSTL NFSDNMFPVP RTNAGFGANV  240
AIPVMEYVEN SKQQVGSGTM TKQTVPNSWK PLGKLNQHDH QVEVGERMDM EVMDNAIQLD  300
DNDNIEYPNP DDAGYIAENS LRHQSFMEGF ASILSDDGNN STSPNGPCYN LDNSSCGGDL  360
EDNGKYWNNI LDNVVTFTSG SPIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-106	MYB family protein