PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027152506.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 368aa    MW: 41362.6 Da    PI: 7.1987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027152506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-06205224120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C+k+F+r  n++ H+
  XP_027152506.1 205 FSCPVCNKTFNRYNNMQMHM 224
                     89*****************9 PP

2zf-C2H216.22.9e-05290312123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgk+F  + + ++H +++
  XP_027152506.1 290 FQCRKCGKPFAVRGDWRTHEKNC 312
                     89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MVASIFSSTS IHLSLFDLWT LIEDVPHSQE CITVIERGSM TAYRAQLQIA RSVTIRCMAL  60
AKRFDAMASS LVGELLHSHT LKSSSPSRCR RLATKGETDE IGSLEADDQD DDSLTLLSLA  120
PPGQNNTSKN LLDCSFEYSS CQLPQDNYQQ CPRTSAENGV TVALHIGLPT SEASSTSHAH  180
NFGVLPEGQY WIPTPAQILV GPTQFSCPVC NKTFNRYNNM QMHMWGHGSQ YRKGPESLRG  240
TKPASSMLKL PCYCCAEGCK NNIDHPRSRP LKDFRTLQTH YKRKHGTKPF QCRKCGKPFA  300
VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHIRAFGDG HAAHSQDLRG IEEFVELEED  360
DEEEEDNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-116C2H2 family protein