PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027152506.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 368aa MW: 41362.6 Da PI: 7.1987 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.4e-06 | 205 | 224 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ XP_027152506.1 205 FSCPVCNKTFNRYNNMQMHM 224 89*****************9 PP | |||||||
2 | zf-C2H2 | 16.2 | 2.9e-05 | 290 | 312 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+F + + ++H +++ XP_027152506.1 290 FQCRKCGKPFAVRGDWRTHEKNC 312 89*****************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence |
MVASIFSSTS IHLSLFDLWT LIEDVPHSQE CITVIERGSM TAYRAQLQIA RSVTIRCMAL 60 AKRFDAMASS LVGELLHSHT LKSSSPSRCR RLATKGETDE IGSLEADDQD DDSLTLLSLA 120 PPGQNNTSKN LLDCSFEYSS CQLPQDNYQQ CPRTSAENGV TVALHIGLPT SEASSTSHAH 180 NFGVLPEGQY WIPTPAQILV GPTQFSCPVC NKTFNRYNNM QMHMWGHGSQ YRKGPESLRG 240 TKPASSMLKL PCYCCAEGCK NNIDHPRSRP LKDFRTLQTH YKRKHGTKPF QCRKCGKPFA 300 VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHIRAFGDG HAAHSQDLRG IEEFVELEED 360 DEEEEDNY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 1e-116 | C2H2 family protein |