PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027151239.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 491aa MW: 54254.1 Da PI: 9.1832

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027151239.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027151239.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	13.4	0.00024	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_027151239.1 153 WKCEKCSKIYAVQSDWKAHTKTC 175 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MFHYTVMSNS ASLSEEASVS SVSKVQDFGS LNPMVQTSSS HQQPQKIKKK RNLPGNPDPD 60 AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNN KEIKKRAYVC 120 PEPTCVHHHP SRALGDLTGI KKHYCRKHGE KKWKCEKCSK IYAVQSDWKA HTKTCGTREY 180 RCDCGTLFSR KDSFITHRAF CDALAQESAR LSANSVLAAT AAATANPQLF RLNFHQTTTT 240 PSSLFPFPPT QHDQQQPHFP NPPTPTPTDH HISLNHPWVD SCQNPKPTQY PNQPQLLHDI 300 KPETLHLPIS SPFLYQEPPP PTHKRINIPS LIPVQTQLND TAGVHHLSAT ALLQKAATLG 360 AHSVGHVNSA MTQLDMSTIG HVTNGIPPEY SGFTTSANLA AWQKSDRLTR DFLGLTGDHQ 420 SCGGGGGGSV NGNGNGNIDV NVNVNMRGVL SFTGSVEFPA TYERDLSLLK HQSFGFAEPA 480 ASEAWRNCSR V

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MFHYTVMSNS ASLSEEASVS SVSKVQDFGS LNPMVQTSSS HQQPQKIKKK RNLPGNPDPD  60
AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNN KEIKKRAYVC  120
PEPTCVHHHP SRALGDLTGI KKHYCRKHGE KKWKCEKCSK IYAVQSDWKA HTKTCGTREY  180
RCDCGTLFSR KDSFITHRAF CDALAQESAR LSANSVLAAT AAATANPQLF RLNFHQTTTT  240
PSSLFPFPPT QHDQQQPHFP NPPTPTPTDH HISLNHPWVD SCQNPKPTQY PNQPQLLHDI  300
KPETLHLPIS SPFLYQEPPP PTHKRINIPS LIPVQTQLND TAGVHHLSAT ALLQKAATLG  360
AHSVGHVNSA MTQLDMSTIG HVTNGIPPEY SGFTTSANLA AWQKSDRLTR DFLGLTGDHQ  420
SCGGGGGGSV NGNGNGNIDV NVNVNMRGVL SFTGSVEFPA TYERDLSLLK HQSFGFAEPA  480
ASEAWRNCSR V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	C2H2 family protein