PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027151194.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 178aa    MW: 20533.5 Da    PI: 10.1441
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027151194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++gklye++s
  XP_027151194.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIVFSNRGKLYEFCS 59
                    79***********************************************96 PP

2K-box94.81.4e-3180172799
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++++++ +s +qe+ kLk+++e Lq++qRhllGedL +L  k+L qLe+qL+ sl++iRs+K++++l+q+++lq+ke++l e nkaLr+kl+
  XP_027151194.1  80 MNQSSKDPQSDYQEYLKLKARVEVLQQSQRHLLGEDLAQLGAKQLDQLERQLDASLRQIRSTKTQHMLDQLSDLQQKERSLMEVNKALRNKLQ 172
                     45788999**********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIVFSN RGKLYEFCSS  60
SSMSKTLERY HRCSYADAGM NQSSKDPQSD YQEYLKLKAR VEVLQQSQRH LLGEDLAQLG  120
AKQLDQLERQ LDASLRQIRS TKTQHMLDQL SDLQQKERSL MEVNKALRNK LQHGGSRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.33e-87MIKC_MADS family protein