PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027151193.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 238aa MW: 27410.1 Da PI: 8.3113

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027151193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.6	2.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++gklye++s XP_027151193.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	94.7	1.5e-31	80	173	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++++ +s +qe+ kLk+++e Lq++qRhllGedL +L k+L qLe+qL+ sl++iRs+K++++l+q+++lq+ke++l e nkaLr+klee XP_027151193.1 80 MNQSSKDPQSDYQEYLKLKARVEVLQQSQRHLLGEDLAQLGAKQLDQLERQLDASLRQIRSTKTQHMLDQLSDLQQKERSLMEVNKALRNKLEE 173 45788999***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIVFSN RGKLYEFCSS 60 SSMSKTLERY HRCSYADAGM NQSSKDPQSD YQEYLKLKAR VEVLQQSQRH LLGEDLAQLG 120 AKQLDQLERQ LDASLRQIRS TKTQHMLDQL SDLQQKERSL MEVNKALRNK LEETTAAYQL 180 SWDSEEHNLR HRSQTIHPEG FFQPLECNSS IMNYNMVVAD AEAEPTQNPS GILPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.1	2e-97	MIKC_MADS family protein