PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027150561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 268aa MW: 31270.7 Da PI: 8.822 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 1.9e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr g+lKK +ELSvLCda++ +iifs++gkl+ey+s XP_027150561.1 9 KRIENNTSRQVTFSKRRSGLLKKTHELSVLCDAQIGLIIFSNKGKLFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 62 | 2.2e-21 | 83 | 170 | 7 | 94 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++l+++++e+ el+++k+e+ nLq ++ +++G+dL+s + eL+qLeqqLe s++k+R++K ell +q+e+l++ ek l++en+++ XP_027150561.1 83 EDLAKSHNERVFGELKRMKSETLNLQLSLQRYKGDDLSSAHYDELNQLEQQLELSVTKVRARKFELLDQQLENLKRTEKLLEKENQEM 170 558899999****************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence |
MGRGKIELKR IENNTSRQVT FSKRRSGLLK KTHELSVLCD AQIGLIIFSN KGKLFEYCSN 60 PLSMDQIIER YLKTKGTSIP DHEDLAKSHN ERVFGELKRM KSETLNLQLS LQRYKGDDLS 120 SAHYDELNQL EQQLELSVTK VRARKFELLD QQLENLKRTE KLLEKENQEM CTWLMSNYYQ 180 KQRVELEHSH QQAMTELKLV GQHAILDQFP FSGEEQPSEV LQLANLPLNI HQYRLQPIQP 240 NLQGYGQPGC SYGTHRRHHP YTKVHVLT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-59 | MIKC_MADS family protein |