PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027150522.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 31270.7 Da    PI: 8.822
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027150522.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.11.9e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr g+lKK +ELSvLCda++ +iifs++gkl+ey+s
  XP_027150522.1  9 KRIENNTSRQVTFSKRRSGLLKKTHELSVLCDAQIGLIIFSNKGKLFEYCS 59
                    79***********************************************96 PP
2K-box622.2e-2183170794
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     ++l+++++e+   el+++k+e+ nLq ++ +++G+dL+s  + eL+qLeqqLe s++k+R++K ell +q+e+l++ ek l++en+++
  XP_027150522.1  83 EDLAKSHNERVFGELKRMKSETLNLQLSLQRYKGDDLSSAHYDELNQLEQQLELSVTKVRARKFELLDQQLENLKRTEKLLEKENQEM 170
                     558899999****************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGRGKIELKR IENNTSRQVT FSKRRSGLLK KTHELSVLCD AQIGLIIFSN KGKLFEYCSN  60
PLSMDQIIER YLKTKGTSIP DHEDLAKSHN ERVFGELKRM KSETLNLQLS LQRYKGDDLS  120
SAHYDELNQL EQQLELSVTK VRARKFELLD QQLENLKRTE KLLEKENQEM CTWLMSNYYQ  180
KQRVELEHSH QQAMTELKLV GQHAILDQFP FSGEEQPSEV LQLANLPLNI HQYRLQPIQP  240
NLQGYGQPGC SYGTHRRHHP YTKVHVLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-59MIKC_MADS family protein